| Definition | Bacillus licheniformis ATCC 14580, complete genome. |
|---|---|
| Accession | NC_006322 |
| Length | 4,222,645 |
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The map label for this gene is yjcD [H]
Identifier: 52785047
GI number: 52785047
Start: 1282422
End: 1284704
Strand: Reverse
Name: yjcD [H]
Synonym: BLi01277
Alternate gene names: 52785047
Gene position: 1284704-1282422 (Counterclockwise)
Preceding gene: 52785048
Following gene: 52785044
Centisome position: 30.42
GC content: 48.75
Gene sequence:
>2283_bases TTGAAATGCGCCCGATTCAATAACCGAGACATTCATATACATACATATTCGAGAGAACACCTGCAATTCCTCTTTGATGA AGCAAGAAAAGACAGGATCACGTGTAAATATTGCGGCTTGCCGCTCAGACTGAAATTGTCGATTCATGAAGAGCCGCATT TTTTCCACCGGGAAAACGGGGATTTTTCTCAATGTGAAGCGGCTTGCTTAAATGAGAAGACAGAGCAGAAGACCAAACAG AACGATTATACTGAAAGCGGCGTTTTCCGCCTCCCGAAAGGCAAAGCGATCGGAGAGGAAAAGAAGGCGGACACGGACTT CTGGACGCCGCCTCGCGAAGCTTCCATCCATTCTCCTTTCTCTCCAGCGGCAGAAACGGCTCCGGAACCGGTCTTTCCGA ATGTGCCGCTGAATGAGAAACAGCTTGCCGCCGTGACGGCCCCCGAAGAACCCCTTCTCGTTCTGGCCGGCGCGGGAAGC GGAAAAACGCGGGTATTAACCGCGCGAGCGGCTTATATGATATCCCGGCTCGATATCCCGCCTTCTGCCATATTGCTCGT CACATTCACGACAAAAGCTGTGAAAGAAATGAAAGAGCGGATGGCCTCGCTATACGGTTTGCCGATGCAGACTGTGAACC GCCTCGTGACAGGCACCTTCCACAGCTTTTTTTACAAAATTCTTTATCATCATGATCCGGCCAAATGGAATGGCGAGCAC CTGCTGAAATGGGAATGGCAAAAAGAACAGTACATCAAAATGGCCCTTGCCGAAGAAGGGCTTGATGAAAAAGACTTTCC GGTTGACCAGGCGATCCAGCAGATCGGCTACTGGAAGAACGCTTATCTTCCGGGTGAACAGATTCCGCTTGAAGACGAAT GGGAAAAGCGGGTTCACCGGCTGTACCGTCATTATGAAGAACAAAAAGCAGCGCGGCGCCAATTCGATTTCGACGATATG GCATCTGCGTGCTGGCAGCTGTTTCAAGAACAGCCGGACATTTTAAAGCGATATCAGACGCGCTTTCACGCGATTTTGAT TGACGAATTTCAGGACATTAACCCTGTTCAATACGCCATCATCAAGCTCTTGGCAAGCCCCGAAAACAACCTGACCTGTG TCGGGGATGATGATCAGTCAATCTACGCGTTCAGAGGGAGCAGTCCTTCTTTTATACTCGATTTTGAAAAAGATTATCCG AAGGCGAAAACGGTCCGCCTCACGACGAATTACAGATCGAGCCATCCGATTGTGGCAAGCGCCGATATGGTCGTAAGGAA AAACAAAAAGCGTTTTCCGAAAACATTAAGCGCCGCGAGAGACGACCGCCAAAAACCGCTCTTATTTTATCCTTATGATG AAGAGGAAGAAGCGATTATGATCGTCTCTGATATCCAAGAAAAAATTGAAATGGGCGCAAAGCCTGATGACTTCGCCATC CTATACCGGACAAACAGCAGCGGCCGCGCCATTTTTGAACGTCTGCACCAGTCAGCCATTCCGTACACGGCTGAACAAGG CGTCCGGTCGTTTTACAGCAGGAGGATCGTCCGGCAGATGCTGGCCTATCTCTACTTAAGCCAAAATCAAGATGACGCGG AAGCCGTAAAGCAGATTTTACCCGCCCTCTTTCTCAAGCAGTCCGCTTTAAACACGCTTAAAGCGCTCTCGATTACAGAA GATTGCACAATGGTTCAGGCGCTTGAAAAATTGACTGACATTAAACCGTTTCAGCTTGATAAAATAAAAAAAATCGTTCC TTTTTTCCCAGGCTTAAAAACGATGAAGCCGGTTGAAGCCATCTCTTTCGCAGAAGAAAAGATGGGCTTTTCCGATTACC TGAAAAAGCGCGGAAACGAAGGGAACAAGCTCGAAAAAGGGTCTGACGATCTGCGGGATCTCAAAACTGCGGCAAAAAAA TTCAAAACGATCCCCGAATTTCTTGAGCATGTCGATCATATGAGAGCCGCGGAAAAGCAAAAAGCTGACGGATACGGTGT TCAGCTTTTGACAATTCATCGTGCGAAAGGGCTTGAATTTAAAACGGTCTATATACTGGGAGTGCAGGACGGCTCGATTC CGCATGACTTTGCCCTGGAGACAGCGAGAAAAGGCGATGAAACCGCTCTTGAAGAAGAGCGGAGGCTGCTGTATGTCGCC ATGACCCGGGCCGAGGACCGCCTGTATATCAGCGTCCCTTCCTTCAGAAGGGGAAGAACGGCATACCGCTCAAGGTTTTT ACAGCCTATTTTACGCCCGAATCCACAAGTTCAGCTGCAATAA
Upstream 100 bases:
>100_bases TTAATTCCCAAAAATCTACTGTTTTAAACGGTTTTCATTTGATATGATAGACGTTGTCTCATGACACCAGACGACTACCC ATTAATTGGAGGACCTCTTT
Downstream 100 bases:
>100_bases AAGACACCGTGCCCTCCTTTTATCGGAAGGCGCGGTGTTTATTTTTTGCTGTTCATCATTTTCGCGATCGTGTTGAAATC CATTTTTTCTTTGCCGCTTA
Product: YjcD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENGDFSQCEAACLNEKTEQKTKQ NDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPFSPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGS GKTRVLTARAAYMISRLDIPPSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHRLYRHYEEQKAARRQFDFDDM ASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAIIKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYP KAKTVRLTTNYRSSHPIVASADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQILPALFLKQSALNTLKALSITE DCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEAISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKK FKTIPEFLEHVDHMRAAEKQKADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ
Sequences:
>Translated_760_residues MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENGDFSQCEAACLNEKTEQKTKQ NDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPFSPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGS GKTRVLTARAAYMISRLDIPPSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHRLYRHYEEQKAARRQFDFDDM ASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAIIKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYP KAKTVRLTTNYRSSHPIVASADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQILPALFLKQSALNTLKALSITE DCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEAISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKK FKTIPEFLEHVDHMRAAEKQKADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ >Mature_760_residues MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENGDFSQCEAACLNEKTEQKTKQ NDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPFSPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGS GKTRVLTARAAYMISRLDIPPSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHRLYRHYEEQKAARRQFDFDDM ASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAIIKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYP KAKTVRLTTNYRSSHPIVASADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQILPALFLKQSALNTLKALSITE DCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEAISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKK FKTIPEFLEHVDHMRAAEKQKADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ
Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=645, Percent_Identity=34.1085271317829, Blast_Score=305, Evalue=5e-84, Organism=Escherichia coli, GI48994965, Length=634, Percent_Identity=30.7570977917981, Blast_Score=238, Evalue=1e-63, Organism=Escherichia coli, GI1787196, Length=387, Percent_Identity=28.1653746770026, Blast_Score=104, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6322369, Length=492, Percent_Identity=30.0813008130081, Blast_Score=145, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6324477, Length=448, Percent_Identity=24.7767857142857, Blast_Score=90, Evalue=1e-18,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 87725; Mature: 87725
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENG CCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEECCCC DFSQCEAACLNEKTEQKTKQNDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPF CHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGSGKTRVLTARAAYMISRLDIP CCHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCCC PSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH CCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHR EEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH LYRHYEEQKAARRQFDFDDMASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAI HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCHHHHHH IKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYPKAKTVRLTTNYRSSHPIVAS HHHHCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEC ADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI CHHHHHCCHHHCHHHHHHHHCCCCCCEEECCCCCCCCEEEEHHHHHHHHHCCCCCCCEEE LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQIL EEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH PALFLKQSALNTLKALSITEDCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEA HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHH ISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKKFKTIPEFLEHVDHMRAAEKQ HHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA CCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCEEEEE MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ EECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEC >Mature Secondary Structure MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENG CCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEECCCC DFSQCEAACLNEKTEQKTKQNDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPF CHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGSGKTRVLTARAAYMISRLDIP CCHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCCC PSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH CCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHR EEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH LYRHYEEQKAARRQFDFDDMASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAI HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCHHHHHH IKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYPKAKTVRLTTNYRSSHPIVAS HHHHCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEC ADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI CHHHHHCCHHHCHHHHHHHHCCCCCCEEECCCCCCCCEEEEHHHHHHHHHCCCCCCCEEE LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQIL EEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH PALFLKQSALNTLKALSITEDCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEA HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHH ISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKKFKTIPEFLEHVDHMRAAEKQ HHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA CCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCEEEEE MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ EECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]