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The map label for this gene is ygaC

Identifier: 52784688

GI number: 52784688

Start: 907129

End: 907659

Strand: Direct

Name: ygaC

Synonym: BLi00890

Alternate gene names: NA

Gene position: 907129-907659 (Clockwise)

Preceding gene: 52784687

Following gene: 52784689

Centisome position: 21.48

GC content: 42.56

Gene sequence:

>531_bases
ATGGGCTTTCCCAAGGAAGGAGAAACCATTCAAATTCATAGCTATAAGCACAATGGGCAGATTCATCGGATTTGGAACGA
AACAACGATTTTAAAAGCAACGGAATTGTGCATCATCGGCGCCAATGACCGGACAATGGTCACGGAATCTGACGGCCGGA
CATGGGTGACGCGAGAGCCCGCCATTTGTTATTTCCATGCAAAGCAGTGGTTTAACGTCATCGGCATGCTTCGTGAAGAC
GGGATTTATTACTATTGCAACATCAGCTCGCCGTTTGCTTTGGACGATGAAGCCATCAAATACATCGACTATGATTTAGA
TGTAAAGGTCTTCCCGGATATGACGTATCATATTCTTGATGAAGATGAGTACGCGGATCATAAAAAGGCGATGAATTATC
CGAAGGAAATCGACGGCATTTTAAGGTACCACTTAAATACGCTGCTGCATTGGATACACCAAAGAAAAGGCCCGTTTGCA
TCTGAATTTATTGATATTTGGTATGAACGGTATTTGCATTATACAAAATAA

Upstream 100 bases:

>100_bases
TTTTTTATTTTCAAACGTTATAATAAATAAAAGAACTGTCGGACAGGCGATGTGACACACTGACTTGTAAGGCTTTTGCA
AAGAAAGTAGGGGAGAAAAC

Downstream 100 bases:

>100_bases
TCCTAAAAAACCTGTTGAGGCCAACAGGTTTTTTGCGGTGTACTCACACATCAAGATATAGAGGGGGGAAGACGTGTGGG
GGTAATCAGAAGGTACATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MGFPKEGETIQIHSYKHNGQIHRIWNETTILKATELCIIGANDRTMVTESDGRTWVTREPAICYFHAKQWFNVIGMLRED
GIYYYCNISSPFALDDEAIKYIDYDLDVKVFPDMTYHILDEDEYADHKKAMNYPKEIDGILRYHLNTLLHWIHQRKGPFA
SEFIDIWYERYLHYTK

Sequences:

>Translated_176_residues
MGFPKEGETIQIHSYKHNGQIHRIWNETTILKATELCIIGANDRTMVTESDGRTWVTREPAICYFHAKQWFNVIGMLRED
GIYYYCNISSPFALDDEAIKYIDYDLDVKVFPDMTYHILDEDEYADHKKAMNYPKEIDGILRYHLNTLLHWIHQRKGPFA
SEFIDIWYERYLHYTK
>Mature_175_residues
GFPKEGETIQIHSYKHNGQIHRIWNETTILKATELCIIGANDRTMVTESDGRTWVTREPAICYFHAKQWFNVIGMLREDG
IYYYCNISSPFALDDEAIKYIDYDLDVKVFPDMTYHILDEDEYADHKKAMNYPKEIDGILRYHLNTLLHWIHQRKGPFAS
EFIDIWYERYLHYTK

Specific function: Unknown

COG id: COG3557

COG function: function code J; Uncharacterized domain/protein associated with RNAses G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0374 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007295
- InterPro:   IPR016882 [H]

Pfam domain/function: PF04167 DUF402 [H]

EC number: NA

Molecular weight: Translated: 21035; Mature: 20904

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFPKEGETIQIHSYKHNGQIHRIWNETTILKATELCIIGANDRTMVTESDGRTWVTREP
CCCCCCCCEEEEEEEECCCEEEEEECCEEEEEEEEEEEECCCCCEEEEECCCCEEEECCC
AICYFHAKQWFNVIGMLREDGIYYYCNISSPFALDDEAIKYIDYDLDVKVFPDMTYHILD
EEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCEECCHHHEEECCCCCEEECCCCEEEEEC
EDEYADHKKAMNYPKEIDGILRYHLNTLLHWIHQRKGPFASEFIDIWYERYLHYTK
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GFPKEGETIQIHSYKHNGQIHRIWNETTILKATELCIIGANDRTMVTESDGRTWVTREP
CCCCCCCEEEEEEEECCCEEEEEECCEEEEEEEEEEEECCCCCEEEEECCCCEEEECCC
AICYFHAKQWFNVIGMLREDGIYYYCNISSPFALDDEAIKYIDYDLDVKVFPDMTYHILD
EEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCEECCHHHEEECCCCCEEECCCCEEEEEC
EDEYADHKKAMNYPKEIDGILRYHLNTLLHWIHQRKGPFASEFIDIWYERYLHYTK
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA