Click here to switch to the map view.

The map label for this gene is yfiA [H]

Identifier: 52784654

GI number: 52784654

Start: 876046

End: 876819

Strand: Direct

Name: yfiA [H]

Synonym: BLi00856

Alternate gene names: 52784654

Gene position: 876046-876819 (Clockwise)

Preceding gene: 52784653

Following gene: 52784655

Centisome position: 20.75

GC content: 44.44

Gene sequence:

>774_bases
ATGATGCAGTTGGAAGAATTAATGAACAAGCATTATAAAAAATTGAACGAAAACGATTTTCATGTTTTGAAATATATTTT
GAACCATCAAGACACTTGCTACAAGCTGGGCATCAACGAATTAGCAAAGAAGTGCAATGTATCCCGCACATCGATTTTAA
GACTTTCTCAAAAACTGGATTTCAGCGGGTACAGCGAGTTCAGGGTGTTTCTGAAGTGGGAGGCCGAGAAGCGGGAAGAA
GAGCGGGAAGATTGCCGTTCCTTTGAAAGCCTCATGAGGGATATGGAAGCGAGCATGAAATATTTGAAAAATACGGATTT
GCGAAAGATGTGCCAGCTCATTGACGAAGCGGACCGGATTTTTGTCTATGGTTCAGGCACGGCTCAGACGACGTGCGCTT
ATGAGCTGCAGCGAATGTTTGTTTCTCAGCACCGTTATTTGACGGTGATCAAAGATCAAATCGATTTCGACCTCATGTTT
CCTGATTTTAGCACGGCCGATCTGATCATCATCATTTCGCTGTCAGGAGAAACCCCGTCGCTGATTCCGCAGGCACAGTC
TTTGTCGGCTAAAGGCATTCCTTTTATCTCTTTGACGAATTTGAAAAATAATCTGCTCGCCCAGCTCACTCCTTACAATC
TCTATGCGCCGAGCCAGACGGTGACGGTTTATCCAAAAACAGAGCTGACCGCTTTTGCACCCTTTTTTCTCGTTGGGGAA
GCGCTGTTTCGCAGCTATGTCGACTATGCTGAAGAAAAGAAAAATCAGGAGTAA

Upstream 100 bases:

>100_bases
AAAGCGCCTGGGGCTCCTGAGCCAGACCGCCAGCCCAGGCATATCCCCCCATTTATTCTCGTATTTTATATAATAGAGAC
AGAGAATAAATGGGGTGAAA

Downstream 100 bases:

>100_bases
CAGGGGGGATTCGCATTGATGCAAAAAGTACAGCGGTTCGGAAGCGCCATGTTTGTGCCGGTTTTGCTATTTGCTTTTGC
CGGGATCGTCGTGGGCCTCA

Product: YfiA

Products: NA

Alternate protein names: Glv operon regulatory protein [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MMQLEELMNKHYKKLNENDFHVLKYILNHQDTCYKLGINELAKKCNVSRTSILRLSQKLDFSGYSEFRVFLKWEAEKREE
EREDCRSFESLMRDMEASMKYLKNTDLRKMCQLIDEADRIFVYGSGTAQTTCAYELQRMFVSQHRYLTVIKDQIDFDLMF
PDFSTADLIIIISLSGETPSLIPQAQSLSAKGIPFISLTNLKNNLLAQLTPYNLYAPSQTVTVYPKTELTAFAPFFLVGE
ALFRSYVDYAEEKKNQE

Sequences:

>Translated_257_residues
MMQLEELMNKHYKKLNENDFHVLKYILNHQDTCYKLGINELAKKCNVSRTSILRLSQKLDFSGYSEFRVFLKWEAEKREE
EREDCRSFESLMRDMEASMKYLKNTDLRKMCQLIDEADRIFVYGSGTAQTTCAYELQRMFVSQHRYLTVIKDQIDFDLMF
PDFSTADLIIIISLSGETPSLIPQAQSLSAKGIPFISLTNLKNNLLAQLTPYNLYAPSQTVTVYPKTELTAFAPFFLVGE
ALFRSYVDYAEEKKNQE
>Mature_257_residues
MMQLEELMNKHYKKLNENDFHVLKYILNHQDTCYKLGINELAKKCNVSRTSILRLSQKLDFSGYSEFRVFLKWEAEKREE
EREDCRSFESLMRDMEASMKYLKNTDLRKMCQLIDEADRIFVYGSGTAQTTCAYELQRMFVSQHRYLTVIKDQIDFDLMF
PDFSTADLIIIISLSGETPSLIPQAQSLSAKGIPFISLTNLKNNLLAQLTPYNLYAPSQTVTVYPKTELTAFAPFFLVGE
ALFRSYVDYAEEKKNQE

Specific function: Positive regulator of the glv operon expression, which consists of glvA, glvR and glvC [H]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 29943; Mature: 29943

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00039 DEAD_ATP_HELICASE ; PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQLEELMNKHYKKLNENDFHVLKYILNHQDTCYKLGINELAKKCNVSRTSILRLSQKLD
CCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHEECCHHHHHHHHCCCHHHHHHHHHHCC
FSGYSEFRVFLKWEAEKREEEREDCRSFESLMRDMEASMKYLKNTDLRKMCQLIDEADRI
CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEE
FVYGSGTAQTTCAYELQRMFVSQHRYLTVIKDQIDFDLMFPDFSTADLIIIISLSGETPS
EEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCEEEEEEECCCCCC
LIPQAQSLSAKGIPFISLTNLKNNLLAQLTPYNLYAPSQTVTVYPKTELTAFAPFFLVGE
CCCCHHCCCCCCCCEEEECCCCCCHHHHCCCCEEECCCCEEEEECCCCHHHHHHHHHHHH
ALFRSYVDYAEEKKNQE
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMQLEELMNKHYKKLNENDFHVLKYILNHQDTCYKLGINELAKKCNVSRTSILRLSQKLD
CCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHEECCHHHHHHHHCCCHHHHHHHHHHCC
FSGYSEFRVFLKWEAEKREEEREDCRSFESLMRDMEASMKYLKNTDLRKMCQLIDEADRI
CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEE
FVYGSGTAQTTCAYELQRMFVSQHRYLTVIKDQIDFDLMFPDFSTADLIIIISLSGETPS
EEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCEEEEEEECCCCCC
LIPQAQSLSAKGIPFISLTNLKNNLLAQLTPYNLYAPSQTVTVYPKTELTAFAPFFLVGE
CCCCHHCCCCCCCCEEEECCCCCCHHHHCCCCEEECCCCEEEEECCCCHHHHHHHHHHHH
ALFRSYVDYAEEKKNQE
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704981; 9384377; 11489864 [H]