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The map label for this gene is ycnC [H]

Identifier: 52784288

GI number: 52784288

Start: 471262

End: 472182

Strand: Reverse

Name: ycnC [H]

Synonym: BLi00468

Alternate gene names: 52784288

Gene position: 472182-471262 (Counterclockwise)

Preceding gene: 52784289

Following gene: 52784287

Centisome position: 11.18

GC content: 41.26

Gene sequence:

>921_bases
ATGAGTTTTATCATTGCGAAAGAAGGAGCCGGAATGAACGAAAAAAAAGCAGCAGTCTTAAGGGCCGCCAAAAAGCTGTT
TGCCCAAAAAGGCTATCACAATGTTGCAATGCAAGCGATCGCTGAAGAATGCAAAATGTCAAAAGCATCTATTTATAAAC
TGTTTCAATCTAAAGAAGATCTTCTGCTGGCATTGATCAAGTTCAGAAAGCATGAAATGCTGAACAAAAGCGCCGTCATC
AATACGGAAACCTCGCTGACGCCGAAAGAAAGATTCGCTAAAAAAATCGCTTTGGAGATTACGGAATTCAGGGAAAACCG
CCAATTTATCAATTTCATCTCCAATGAGGGATCATCTCCGGATACCGCAGTATTTAAAAAGCATCTGAAAGAAACAAAAT
CAATGATTATCAGCTGGCATAAAGACTCTATCATTCAAGCGTACGGCGAAGAGGTCGAGCCGTTTATATGGGATATCGTC
ATCATTTTCCACGGGCTGATGAGGGAATTCCTGTTTTTAGTCGGCACTGGAAAAGCGCAGCCTGACGTTAAAACGATTCC
GCCATTCATTATGTCAGTTCTGGACCTCTTCATAGAGAAAAAGCTGAACGAAGATCAGAAAAGTTCATTAAATGAAGACA
TTATTGCCTCCTATTCGAATTTCTCATCATGCTGGGCACCGCCCAAAAAAGAGGAATTGCTTGAAGACCTTTTGCAAAAA
CTGAAAACCAAGATTTCTTCGCTGCCACAAGACGATGTTTCCGTGACAGAATTGCTGTCTGCCGCAGATTTGCTGAGCGA
GGAGCTTTTCGCCAATGAGCCACGCACGTATTTAATTAAGGCTCTCCTTGATTACCTTGGAAAAATCGAGGCCATCCAAT
ACGATGTTTCACAAATACAAACGATTAGTATAAAAGAATAA

Upstream 100 bases:

>100_bases
TGGATCAGCCTTCATCGTGACCCAAAACAAAATCGTTGACCGAAACTGTTCGGTCTGTTAATATTTCATTTATGAAAACT
CATGGGTTTTTTAGTGACCC

Downstream 100 bases:

>100_bases
GAGGGATTGATATGAGTACAGGAACTGAACAACAGACATACAACAGAAATATCATCGTAGGTTTGCTTATTGCCGGGGCG
TTTATCGCGATCTTGAACCA

Product: YcnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSFIIAKEGAGMNEKKAAVLRAAKKLFAQKGYHNVAMQAIAEECKMSKASIYKLFQSKEDLLLALIKFRKHEMLNKSAVI
NTETSLTPKERFAKKIALEITEFRENRQFINFISNEGSSPDTAVFKKHLKETKSMIISWHKDSIIQAYGEEVEPFIWDIV
IIFHGLMREFLFLVGTGKAQPDVKTIPPFIMSVLDLFIEKKLNEDQKSSLNEDIIASYSNFSSCWAPPKKEELLEDLLQK
LKTKISSLPQDDVSVTELLSAADLLSEELFANEPRTYLIKALLDYLGKIEAIQYDVSQIQTISIKE

Sequences:

>Translated_306_residues
MSFIIAKEGAGMNEKKAAVLRAAKKLFAQKGYHNVAMQAIAEECKMSKASIYKLFQSKEDLLLALIKFRKHEMLNKSAVI
NTETSLTPKERFAKKIALEITEFRENRQFINFISNEGSSPDTAVFKKHLKETKSMIISWHKDSIIQAYGEEVEPFIWDIV
IIFHGLMREFLFLVGTGKAQPDVKTIPPFIMSVLDLFIEKKLNEDQKSSLNEDIIASYSNFSSCWAPPKKEELLEDLLQK
LKTKISSLPQDDVSVTELLSAADLLSEELFANEPRTYLIKALLDYLGKIEAIQYDVSQIQTISIKE
>Mature_305_residues
SFIIAKEGAGMNEKKAAVLRAAKKLFAQKGYHNVAMQAIAEECKMSKASIYKLFQSKEDLLLALIKFRKHEMLNKSAVIN
TETSLTPKERFAKKIALEITEFRENRQFINFISNEGSSPDTAVFKKHLKETKSMIISWHKDSIIQAYGEEVEPFIWDIVI
IFHGLMREFLFLVGTGKAQPDVKTIPPFIMSVLDLFIEKKLNEDQKSSLNEDIIASYSNFSSCWAPPKKEELLEDLLQKL
KTKISSLPQDDVSVTELLSAADLLSEELFANEPRTYLIKALLDYLGKIEAIQYDVSQIQTISIKE

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 34820; Mature: 34689

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFIIAKEGAGMNEKKAAVLRAAKKLFAQKGYHNVAMQAIAEECKMSKASIYKLFQSKED
CCEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
LLLALIKFRKHEMLNKSAVINTETSLTPKERFAKKIALEITEFRENRQFINFISNEGSSP
HHHHHHHHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DTAVFKKHLKETKSMIISWHKDSIIQAYGEEVEPFIWDIVIIFHGLMREFLFLVGTGKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDVKTIPPFIMSVLDLFIEKKLNEDQKSSLNEDIIASYSNFSSCWAPPKKEELLEDLLQK
CCCHHCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHCCHHHCCCCCHHHHHHHHHHH
LKTKISSLPQDDVSVTELLSAADLLSEELFANEPRTYLIKALLDYLGKIEAIQYDVSQIQ
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TISIKE
CCCCCC
>Mature Secondary Structure 
SFIIAKEGAGMNEKKAAVLRAAKKLFAQKGYHNVAMQAIAEECKMSKASIYKLFQSKED
CEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
LLLALIKFRKHEMLNKSAVINTETSLTPKERFAKKIALEITEFRENRQFINFISNEGSSP
HHHHHHHHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DTAVFKKHLKETKSMIISWHKDSIIQAYGEEVEPFIWDIVIIFHGLMREFLFLVGTGKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDVKTIPPFIMSVLDLFIEKKLNEDQKSSLNEDIIASYSNFSSCWAPPKKEELLEDLLQK
CCCHHCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHCCHHHCCCCCHHHHHHHHHHH
LKTKISSLPQDDVSVTELLSAADLLSEELFANEPRTYLIKALLDYLGKIEAIQYDVSQIQ
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TISIKE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]