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The map label for this gene is ywhA [H]

Identifier: 52784122

GI number: 52784122

Start: 274025

End: 274444

Strand: Reverse

Name: ywhA [H]

Synonym: BLi00299

Alternate gene names: 52784122

Gene position: 274444-274025 (Counterclockwise)

Preceding gene: 52784133

Following gene: 52784102

Centisome position: 6.5

GC content: 44.29

Gene sequence:

>420_bases
ATGAATCACCATCGGATTGAAGCGAATCTATTGGACCATGCTTTCACGAAATATTTGCGGTCTTCAAAGAAATTAGACGA
AGAAACGATTCCGAAAAGTATCACGAGCGGCAAAGGGTTTATTTTGCGTATCATTTACAGACACGGAACATGTACGATAA
AGGAAATTTTACAGGAGGTCGCGCTGTCTCCATCAGCAACGACAACAGCTCTGAACCATTTGGAGAAAGAGGGTCTTGTG
ATCAGATCGAGAAATAACGATGACCGGCGCACCGTCTGGATCGAACTGTCGCAAGAAGGAACGAGGATCGCCGCACAAAT
GGTGGAAAACCGCCAGGCCTTGATCGACAAGCTCTTCGGCAAATTGTCAGAGGAAGAAAAAAAGGCTTTTTTTGCTGTGA
TTGAAAAAGTGATGATGTAA

Upstream 100 bases:

>100_bases
TTTTTGCGGAGCATTCGCTTATGATAAAATAGACCTATGTTTGTTTGGTCAGTATGAAATTGCTGATCTACTACACGATG
TCGGAAATGAGGAAACCTTC

Downstream 100 bases:

>100_bases
AACGGGCCGTCGATCGAAATCGACAGCCTTTTTTTATTGTGTGACGCCAAGCGCGTCCAGCGCCATTTTCAAGTGCTCTT
CTTGTTTCGTTTGAAGGGCA

Product: YwhA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MNHHRIEANLLDHAFTKYLRSSKKLDEETIPKSITSGKGFILRIIYRHGTCTIKEILQEVALSPSATTTALNHLEKEGLV
IRSRNNDDRRTVWIELSQEGTRIAAQMVENRQALIDKLFGKLSEEEKKAFFAVIEKVMM

Sequences:

>Translated_139_residues
MNHHRIEANLLDHAFTKYLRSSKKLDEETIPKSITSGKGFILRIIYRHGTCTIKEILQEVALSPSATTTALNHLEKEGLV
IRSRNNDDRRTVWIELSQEGTRIAAQMVENRQALIDKLFGKLSEEEKKAFFAVIEKVMM
>Mature_139_residues
MNHHRIEANLLDHAFTKYLRSSKKLDEETIPKSITSGKGFILRIIYRHGTCTIKEILQEVALSPSATTTALNHLEKEGLV
IRSRNNDDRRTVWIELSQEGTRIAAQMVENRQALIDKLFGKLSEEEKKAFFAVIEKVMM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 15953; Mature: 15953

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHHRIEANLLDHAFTKYLRSSKKLDEETIPKSITSGKGFILRIIYRHGTCTIKEILQEV
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHCCCCCCEEHEEHHCCCCHHHHHHHHH
ALSPSATTTALNHLEKEGLVIRSRNNDDRRTVWIELSQEGTRIAAQMVENRQALIDKLFG
HCCCCHHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
KLSEEEKKAFFAVIEKVMM
HHCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNHHRIEANLLDHAFTKYLRSSKKLDEETIPKSITSGKGFILRIIYRHGTCTIKEILQEV
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHCCCCCCEEHEEHHCCCCHHHHHHHHH
ALSPSATTTALNHLEKEGLVIRSRNNDDRRTVWIELSQEGTRIAAQMVENRQALIDKLFG
HCCCCHHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
KLSEEEKKAFFAVIEKVMM
HHCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]