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The map label for this gene is yabJ [H]

Identifier: 52783905

GI number: 52783905

Start: 59739

End: 60116

Strand: Direct

Name: yabJ [H]

Synonym: BLi00061

Alternate gene names: 52783905

Gene position: 59739-60116 (Clockwise)

Preceding gene: 52783904

Following gene: 52783906

Centisome position: 1.41

GC content: 48.94

Gene sequence:

>378_bases
ATGACAAAGGTTGTTCAGACAAAAGAAGCACCGGCGGCGATCGGACCGTATTCACAAGGAATTGTTGTCAACAATATGTT
TTACAGTTCGGGGCAAATTCCGCTGACCCCGTCGGGTGAAATGGTGACTGGAGACATCACAGAACAGACGCACCAGGTTT
TCCGCAATTTAAAAGCCGTGCTGAAAGAAGCGGGCGCCTCTCTGGAGACTGTCGTCAAAGCAACCGTGTTTCTGGCGGAT
ATGAATCAATTCACAGAGGTGAATGAAGTTTACGGACAGTACTTCGATACCCACAAACCGGCGAGATCATGCGTTGAGGT
GGCGAGGCTGCCGAAAGACGCGCTTGTTGAAATAGAAGTCATCGCATTAGTGAAATAG

Upstream 100 bases:

>100_bases
CTCTTTCTGAAATCGATATGAAGGAAAAAAAGGTGGAAATACAAAACGGAAATTTTCAGCGTTTTTTTGCAGAAAATGAA
TAGGAAATGGGGAGTTTGAG

Downstream 100 bases:

>100_bases
AAAGAACTCTTAAAAGATGGTTTTGGTCTCAAAATCATCTTTTTTGTTTGGAAAATTTGTCAATTCAGTGTTTTTTTATC
CCAATATTACAAAAATATTT

Product: YabJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MTKVVQTKEAPAAIGPYSQGIVVNNMFYSSGQIPLTPSGEMVTGDITEQTHQVFRNLKAVLKEAGASLETVVKATVFLAD
MNQFTEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK

Sequences:

>Translated_125_residues
MTKVVQTKEAPAAIGPYSQGIVVNNMFYSSGQIPLTPSGEMVTGDITEQTHQVFRNLKAVLKEAGASLETVVKATVFLAD
MNQFTEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK
>Mature_124_residues
TKVVQTKEAPAAIGPYSQGIVVNNMFYSSGQIPLTPSGEMVTGDITEQTHQVFRNLKAVLKEAGASLETVVKATVFLADM
NQFTEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=124, Percent_Identity=46.7741935483871, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=46.8253968253968, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=49.2063492063492, Blast_Score=128, Evalue=1e-31,
Organism=Escherichia coli, GI1787245, Length=114, Percent_Identity=28.9473684210526, Blast_Score=71, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=49.1803278688525, Blast_Score=119, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=49.1803278688525, Blast_Score=119, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=49.1803278688525, Blast_Score=118, Evalue=6e-28,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=53.7190082644628, Blast_Score=134, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=53, Blast_Score=117, Evalue=4e-28,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=46.7213114754098, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13660; Mature: 13529

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVVQTKEAPAAIGPYSQGIVVNNMFYSSGQIPLTPSGEMVTGDITEQTHQVFRNLKAV
CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHH
LKEAGASLETVVKATVFLADMNQFTEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEV
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHEEEEE
IALVK
EEEEC
>Mature Secondary Structure 
TKVVQTKEAPAAIGPYSQGIVVNNMFYSSGQIPLTPSGEMVTGDITEQTHQVFRNLKAV
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHH
LKEAGASLETVVKATVFLADMNQFTEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEV
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHEEEEE
IALVK
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]