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The map label for this gene is ydcM [C]

Identifier: 52142976

GI number: 52142976

Start: 2395816

End: 2396937

Strand: Direct

Name: ydcM [C]

Synonym: BCZK2264

Alternate gene names: 52142976

Gene position: 2395816-2396937 (Clockwise)

Preceding gene: 52142975

Following gene: 52142973

Centisome position: 45.2

GC content: 36.9

Gene sequence:

>1122_bases
ATGATGATCAATAAAGCCTATAAGTTTCGTATCTATCCAAATCAAGCACAAGCAATTCTAATCAACAAAACGATTGGTTG
TTCCCGCTTTGTATTCAATCATTTCCTATCCTTATGGGATCACACATACAAAGAGACAGGAAAAGGTTTGACCTATGGTA
TATGCTCTGCCAAACTCCCTGCCATGAAGAAAGAGTTTGTTTGGCTCAAAGAAGTGGATAGTATTGCGATTCAGTCGTCT
GTTCGCAACCTTGCGGATGCTTATACACGCTTTTTTAAAAAACAAAACAGCGCACCGTGCTTTAAATCAAAGAAGAACAA
CGTACAATCTTACACCACAAAACAAACAAATGAAAACATAGCCGTTGTAGGGAACAAAATAAAGTTGCCGAAACTAGGCC
TTGTTCGATTTGCCAAAAGTCGTGAAGTAGAGGGACGTATTGTAAATGCGACTGTTAGACGAAACCCTTCTGGCAGATAT
TTTGTGTCACTATTAGTTGAAACAGAAGTACAAGAACTTTCGAAAACACATTCTTACATTGGAATAGATGTAGGACTAAA
AGATTTTGCTATTTTATCAGATGGAACACTCTATAAAAATCCGAAGTTCTTCCGATTATTAGAAGATAAGTTAGCGAAAG
CACAGCGTGTTCTTTCTAGAAGAATGAAAGAATCTTCTCGCTGGAATAAACAGCGAGTAAAGGTAGCTAGAATTCATGAA
TACATATCAAATGCTAGAAAAGATTACTTAGACAAAATCTCAACCGAAATCATCAAAAGCCACGATGTTATCGGTATAGA
GGATTTGCAAGTATCGAATATGTTAAAGAATCATAAGTTAGCAAAAGCAATTAGTGAGGTATCCTGGTCACAGTTTCGAA
CCATGTTGGAATATAAAGCAAAATGGTATGGCAAACAAGTCATTGTTGTATCGAAAACATTTGCTTCCAGCCAATTATGT
TCTTGTTGTGGATATCAAAATAAAGACGTTAAAAATCTAAACTTACGTGAATGGGAATGTCCTTCTTGTCGTACACACCA
TGATAGGGATATTAACGCAAGTATCAATATAAAGAATGAAGCGGTAAGGCTTCTAACCGCAAGGACTGCGGGGTTAGCCT
AA

Upstream 100 bases:

>100_bases
AGCCATCTTAATTGTCTGACATACAGACGGTGTTACCTTACTATCTATCGAATATACGTTTGGTATATAATAGTTATATA
CCGAAATGGAGATGAATGAA

Downstream 100 bases:

>100_bases
TCAATTAGAGTTCGATAGAACTCTTTACTTAGGAATCCCTCACTTCTAAACGAAGTGAAAGTGGGGGTAGTTCAATTTTC
AATCAGTAGAAATAATTTCT

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MMINKAYKFRIYPNQAQAILINKTIGCSRFVFNHFLSLWDHTYKETGKGLTYGICSAKLPAMKKEFVWLKEVDSIAIQSS
VRNLADAYTRFFKKQNSAPCFKSKKNNVQSYTTKQTNENIAVVGNKIKLPKLGLVRFAKSREVEGRIVNATVRRNPSGRY
FVSLLVETEVQELSKTHSYIGIDVGLKDFAILSDGTLYKNPKFFRLLEDKLAKAQRVLSRRMKESSRWNKQRVKVARIHE
YISNARKDYLDKISTEIIKSHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTMLEYKAKWYGKQVIVVSKTFASSQLC
SCCGYQNKDVKNLNLREWECPSCRTHHDRDINASINIKNEAVRLLTARTAGLA

Sequences:

>Translated_373_residues
MMINKAYKFRIYPNQAQAILINKTIGCSRFVFNHFLSLWDHTYKETGKGLTYGICSAKLPAMKKEFVWLKEVDSIAIQSS
VRNLADAYTRFFKKQNSAPCFKSKKNNVQSYTTKQTNENIAVVGNKIKLPKLGLVRFAKSREVEGRIVNATVRRNPSGRY
FVSLLVETEVQELSKTHSYIGIDVGLKDFAILSDGTLYKNPKFFRLLEDKLAKAQRVLSRRMKESSRWNKQRVKVARIHE
YISNARKDYLDKISTEIIKSHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTMLEYKAKWYGKQVIVVSKTFASSQLC
SCCGYQNKDVKNLNLREWECPSCRTHHDRDINASINIKNEAVRLLTARTAGLA
>Mature_373_residues
MMINKAYKFRIYPNQAQAILINKTIGCSRFVFNHFLSLWDHTYKETGKGLTYGICSAKLPAMKKEFVWLKEVDSIAIQSS
VRNLADAYTRFFKKQNSAPCFKSKKNNVQSYTTKQTNENIAVVGNKIKLPKLGLVRFAKSREVEGRIVNATVRRNPSGRY
FVSLLVETEVQELSKTHSYIGIDVGLKDFAILSDGTLYKNPKFFRLLEDKLAKAQRVLSRRMKESSRWNKQRVKVARIHE
YISNARKDYLDKISTEIIKSHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTMLEYKAKWYGKQVIVVSKTFASSQLC
SCCGYQNKDVKNLNLREWECPSCRTHHDRDINASINIKNEAVRLLTARTAGLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=353, Percent_Identity=35.1274787535411, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 42868; Mature: 42868

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMINKAYKFRIYPNQAQAILINKTIGCSRFVFNHFLSLWDHTYKETGKGLTYGICSAKLP
CCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
AMKKEFVWLKEVDSIAIQSSVRNLADAYTRFFKKQNSAPCFKSKKNNVQSYTTKQTNENI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCE
AVVGNKIKLPKLGLVRFAKSREVEGRIVNATVRRNPSGRYFVSLLVETEVQELSKTHSYI
EEEECEECCCCHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHCEE
GIDVGLKDFAILSDGTLYKNPKFFRLLEDKLAKAQRVLSRRMKESSRWNKQRVKVARIHE
EEEECCCCEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
YISNARKDYLDKISTEIIKSHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTMLEYKA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KWYGKQVIVVSKTFASSQLCSCCGYQNKDVKNLNLREWECPSCRTHHDRDINASINIKNE
HHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH
AVRLLTARTAGLA
HHHHHHHHHCCCC
>Mature Secondary Structure
MMINKAYKFRIYPNQAQAILINKTIGCSRFVFNHFLSLWDHTYKETGKGLTYGICSAKLP
CCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
AMKKEFVWLKEVDSIAIQSSVRNLADAYTRFFKKQNSAPCFKSKKNNVQSYTTKQTNENI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCE
AVVGNKIKLPKLGLVRFAKSREVEGRIVNATVRRNPSGRYFVSLLVETEVQELSKTHSYI
EEEECEECCCCHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHCEE
GIDVGLKDFAILSDGTLYKNPKFFRLLEDKLAKAQRVLSRRMKESSRWNKQRVKVARIHE
EEEECCCCEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
YISNARKDYLDKISTEIIKSHDVIGIEDLQVSNMLKNHKLAKAISEVSWSQFRTMLEYKA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KWYGKQVIVVSKTFASSQLCSCCGYQNKDVKNLNLREWECPSCRTHHDRDINASINIKNE
HHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH
AVRLLTARTAGLA
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]