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The map label for this gene is xtmA [H]

Identifier: 52142878

GI number: 52142878

Start: 2497020

End: 2497409

Strand: Direct

Name: xtmA [H]

Synonym: BCZK2364

Alternate gene names: 52142878

Gene position: 2497020-2497409 (Clockwise)

Preceding gene: 52142880

Following gene: 52142875

Centisome position: 47.11

GC content: 36.67

Gene sequence:

>390_bases
ATGCTAGATGATGAAGAGCTAACGGAACAAGAATGTTACTTTTGTTTGTATTACGTGAAGTGTTTAAACGGTACGCAAGT
TGCACTGAAAGCCGGCTACACCAAGAGTAGCGCGCATGTTACAAGTTGCCGGTTACTTAGAAGAGAACGTGTAGCATCAT
ACATTCGAGAGATCAAAGGTGAAATGGTTGAGAATATCTTTATTGAAGCGATGGATGTATTGAATGAGTACATCAAAATT
GCTTTTGCGGATATTACGAATTATGTAACCTTTGATCAAAAAGATATAGAAGTTATGGGACCGTTTGGACCTGTAAAAGG
TGAAGATGGAAAACCAGTCATGAGAACCATTAGTTATGCTGATTTTAATGAATCAGATATTTTTTTGTAA

Upstream 100 bases:

>100_bases
CACAAGATAAATGGGCTAACAATTAAAAGGTAACGTTACTATTGCGAAAAGGAGTGTTACTAATGTTAAAAAGCCCAAGA
CAAAAGCCAAGTAAAAAAAG

Downstream 100 bases:

>100_bases
AATTTTCGTAAATCGTAAATACAATACATATATTTATATCGTATAATTCAAATGTAAAGTATTAATAGTGTGAGGGATGT
GATGTATATGCTTTGTTTAA

Product: phage terminase, small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MLDDEELTEQECYFCLYYVKCLNGTQVALKAGYTKSSAHVTSCRLLRRERVASYIREIKGEMVENIFIEAMDVLNEYIKI
AFADITNYVTFDQKDIEVMGPFGPVKGEDGKPVMRTISYADFNESDIFL

Sequences:

>Translated_129_residues
MLDDEELTEQECYFCLYYVKCLNGTQVALKAGYTKSSAHVTSCRLLRRERVASYIREIKGEMVENIFIEAMDVLNEYIKI
AFADITNYVTFDQKDIEVMGPFGPVKGEDGKPVMRTISYADFNESDIFL
>Mature_129_residues
MLDDEELTEQECYFCLYYVKCLNGTQVALKAGYTKSSAHVTSCRLLRRERVASYIREIKGEMVENIFIEAMDVLNEYIKI
AFADITNYVTFDQKDIEVMGPFGPVKGEDGKPVMRTISYADFNESDIFL

Specific function: Functions as a terminase [H]

COG id: COG3728

COG function: function code L; Phage terminase, small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaS and B.subtilis phage SPP1 terminase small subunit [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018925
- InterPro:   IPR005335 [H]

Pfam domain/function: PF10668 Phage_terminase; PF03592 Terminase_2 [H]

EC number: NA

Molecular weight: Translated: 14822; Mature: 14822

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDEELTEQECYFCLYYVKCLNGTQVALKAGYTKSSAHVTSCRLLRRERVASYIREIKG
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EMVENIFIEAMDVLNEYIKIAFADITNYVTFDQKDIEVMGPFGPVKGEDGKPVMRTISYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCCCHHHHHHHHC
DFNESDIFL
CCCCCCCCC
>Mature Secondary Structure
MLDDEELTEQECYFCLYYVKCLNGTQVALKAGYTKSSAHVTSCRLLRRERVASYIREIKG
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EMVENIFIEAMDVLNEYIKIAFADITNYVTFDQKDIEVMGPFGPVKGEDGKPVMRTISYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCCCHHHHHHHHC
DFNESDIFL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377 [H]