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The map label for this gene is ydbD [H]

Identifier: 52142403

GI number: 52142403

Start: 2954310

End: 2955173

Strand: Direct

Name: ydbD [H]

Synonym: BCZK2839

Alternate gene names: 52142403

Gene position: 2954310-2955173 (Clockwise)

Preceding gene: 52142404

Following gene: 52142395

Centisome position: 55.73

GC content: 36.23

Gene sequence:

>864_bases
GTGTACTTCATGTTTTATTATAAAGAGGAAATAATTAATATGATTAAGCCAGATAAACCAGATCCAGCTGCTGCAAAAGT
TTTACAAGAAATATTAGGTGGGCATTATGGTGAAATGCGTACAATGATGCAATACTTTTTCCAAAGCTCAAATTTTAGAG
GTAAAGAGAAGCAATATCGTGATTTACTTCGAGGTGTTTTTTTAGAGGAAATAAGCCATGTAGAACTTGTACAACATACA
ATTAATCAACTATTAACTGGATCTGGTGAACCTACGCCTGGAAATGCCGGTATTGACACAGCACCACTTGACGAAGCGGT
TAAACATGCAAATCCTCATCACTTTATTGTAGGGGCACAAAGTTCATTACCTGTTGATGCAGCTGGCAACCCATGGAATG
GATCTTGGGTATATAGTCATGGGAATTTAATTAGCGATTTATTAGATAACGTAGTACTTGAATCTACAGGTGTACTTCAA
AAAACTAGAATTTATGAAATGAGTTCCAATCAAACTTTTAGAGAAACACTTGCATTTTTAATTGTACGTGATAATGCACA
TCAAAATGCTTTCGCAAAAGCTTTAGAGACATTGGGTGTTGAATGGGGGAAACTCTTCCCTGTGCCGAACTATGATATTA
ATAAATACCCAGAGTGCAGAAAGTATGTAGACATGGGATTTCATAACGCACAATTTAATTTTAGTTTAGATCCAACAAGA
ATGGGAGAAATATTCCAAGGTGAATCACCAAGTAGAAACAAAGGAACATTAGCAGTAACTGACCCGCCAAAAGGTTTTCC
TGTACCAGAACTTCCTGAAATGCCAAATGAGCATAGTCCTGGATTAAAAGATATGGGTCTTTAA

Upstream 100 bases:

>100_bases
TTTGCATTTTGAGGTAATAATCAATTGGTAAAAACATGAATTAAAGTATTAAGTAACCAAATAGCGGACACGATAACAAT
GTTAACTAACTTAAAAAGAG

Downstream 100 bases:

>100_bases
GATCATTATGGCCAACTATTGATTCATGGTTGGTCATAAACTTTTATATGGATTCCAATTACACTTTAATCCACTTCCAT
TTCTTAAACAGAAGCTCCTA

Product: manganese containing catalase

Products: NA

Alternate protein names: General stress protein 80; GSP80 [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MYFMFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYRDLLRGVFLEEISHVELVQHT
INQLLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQSSLPVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQ
KTRIYEMSSNQTFRETLAFLIVRDNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECRKYVDMGFHNAQFNFSLDPTR
MGEIFQGESPSRNKGTLAVTDPPKGFPVPELPEMPNEHSPGLKDMGL

Sequences:

>Translated_287_residues
MYFMFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYRDLLRGVFLEEISHVELVQHT
INQLLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQSSLPVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQ
KTRIYEMSSNQTFRETLAFLIVRDNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECRKYVDMGFHNAQFNFSLDPTR
MGEIFQGESPSRNKGTLAVTDPPKGFPVPELPEMPNEHSPGLKDMGL
>Mature_287_residues
MYFMFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYRDLLRGVFLEEISHVELVQHT
INQLLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQSSLPVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQ
KTRIYEMSSNQTFRETLAFLIVRDNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECRKYVDMGFHNAQFNFSLDPTR
MGEIFQGESPSRNKGTLAVTDPPKGFPVPELPEMPNEHSPGLKDMGL

Specific function: Unknown

COG id: COG3546

COG function: function code P; Mn-containing catalase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the manganese catalase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007760
- InterPro:   IPR012347
- InterPro:   IPR009078 [H]

Pfam domain/function: PF05067 Mn_catalase [H]

EC number: =1.11.1.6 [H]

Molecular weight: Translated: 32296; Mature: 32296

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFMFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYR
CEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
DLLRGVFLEEISHVELVQHTINQLLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECC
SSLPVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQKTRIYEMSSNQTFRETLAFL
CCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHEEECCCCCHHHHHHHHH
IVRDNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECRKYVDMGFHNAQFNFSLDPTR
EEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHH
MGEIFQGESPSRNKGTLAVTDPPKGFPVPELPEMPNEHSPGLKDMGL
HHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYFMFYYKEEIINMIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFRGKEKQYR
CEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
DLLRGVFLEEISHVELVQHTINQLLTGSGEPTPGNAGIDTAPLDEAVKHANPHHFIVGAQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECC
SSLPVDAAGNPWNGSWVYSHGNLISDLLDNVVLESTGVLQKTRIYEMSSNQTFRETLAFL
CCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHEEECCCCCHHHHHHHHH
IVRDNAHQNAFAKALETLGVEWGKLFPVPNYDINKYPECRKYVDMGFHNAQFNFSLDPTR
EEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHH
MGEIFQGESPSRNKGTLAVTDPPKGFPVPELPEMPNEHSPGLKDMGL
HHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]