| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is pcrA [H]
Identifier: 51893964
GI number: 51893964
Start: 3042105
End: 3044582
Strand: Reverse
Name: pcrA [H]
Synonym: STH2826
Alternate gene names: 51893964
Gene position: 3044582-3042105 (Counterclockwise)
Preceding gene: 51893966
Following gene: 51893963
Centisome position: 85.37
GC content: 70.98
Gene sequence:
>2478_bases GTGCGCGGCCGGCTGCTCTCCGGGCTGAACGAGCAGCAGCGGGAGGCGGTGCTGCACGGTCAGGGGCCGCTGCTCATCCT GGCCGGAGCGGGAAGCGGGAAGACCCGCGTCATCGCCCACCGCATCGCCCACCTGATCCTGTTCGGGCCGGAGTACGACC CTGACGCCCCGCCGCCCCCCGGCCTGACGGCGGACGACCTCGAGGCGCTGCGGCTGGCCGTCGAGGGCCCGGGGCCCATC GACACCGGCGCGATCGCCCACCTGCTGGGTGGGGGGATCGATCCCTGGCGCATCCTGGCGATCACCTTCACCAACAAGGC GGCCGCCGAGATGCGGGAGCGGGTGGAGCAACTGGTGGGCCCGAGGGCGCGCGAGGTCTGGGCGGCGACCTTCCACTCGA CGTGCGTCCGCATGCTGCGGCGGGACATTGAGCGGCTGGGCTACGGCCGCAATTTCGTCATCCTGGATGCCGAGGACCAG CAGGCCGTCATCCGGGACTGCCTGAAGCGGCTGGGCCTGTCGGAAAGGCAGTTCCAGCCCGGCGCCGTGCTGGGCACGAT CTCCAACGCGAAGAACGCCATGCTGGATCCCCGGCGGTTCGCCGACCGGGCCGGCGACTACTGGCGGCAGCAGGTGGCCA AGGTCTACGCGCTGTACCAGGAGCAGCTGCGCTCGGGCAATGCGCTGGACTTCGACGACCTCCTGCTGAAGGCCGTGGAG CTGCTGGAGCGGTTCGACGACGTGCGGGAGTACTACCAGCGCAAGTTCGAGTACATCCTCGTCGACGAGTACCAGGACAC CAACCACGTCCAGAACCGGTGGGTCTTCCTGCTGGCCGGGGAGAAGCAGAACCTGGCCGTCGTCGGCGATGACGACCAGG GCATCTACTCGTGGCGCGGGGCGGACATCAGCAACATCCTGGAGTTCGAGGCGCAGTTCCCCGGCTGTCGGACCATTAAG CTGGAGCAGAACTACCGCTCCACGCAGAACATCCTCTCCGCCGCCTATGCGGTGGTGCGGCACAACACGGGCCGCAAGGA GAAGCGGCTCTGGACGGCGGCGGGCCCCGGGGACCCGGTGTACCACTTCACCGCCGCCGACGAGCGGGACGAGGCGGCGT TCGTGGCGCGCGAGGTGGAGCGGCTGGTGGCCGAGGGCCTGCCCGACGGCACCCGCCTGGACTACCAGGACTTCGCCGTG CTCTACCGCACCCACGCCCAGTCCCGCGCGCTGGAGGAGGCCATGGTGCGCCGTTCCATCCCCTATGGCATCTACGGCGG CCTGCGCTTCTTCGAGCGCAAGGAGATCAAGGACGTCCTGGCTTACCTGCGCATCATCGCCAACCCGGCCGACATCGTGT CGTTCCGCCGGGCCGTCGGGGTGCCGAAGCGGGGCATCGGCCCGGCCACGGTGGACAAGCTGGTGGACTACGCCGAGCAG TGGCAGGTGCCGGTGGCACTGGCCGCCCTCGACTGCTCGATGGTGCCGGGCCTCTCCGGCACCTACCAGAAGCGCATGGA GGAGTTCGGCGCCCTCATCGAGGAGCTGACCAACCTGAGCGCGCACTGCACGGTGGGCCAGCTGATTGACGCCGTGCTGG AGCGCACCGGCATCCTGGAGGAGCTCCGGGCCGACACCTCGCTGGAGGCGGCGGCGCGGCTGGAGAACGTGCAGGAGCTG CGCTCGATGGCCGCGGAGTTCGAACCGCCGGCCGGCGAGGAGCTGGACGGCCTCCGGGACCTGGACAGCTTCCTGGCCAC GGTGGCCCTGCTCACCGACGCCGACCAGGTGGGCGAGGGGCAGAACAAGGTGACTCTGATGACCCTCCATTCGGCCAAGG GGCTGGAGTTTCCCGTGGTCTTCCTGGTCGGCCTGGAGGAGGGGGTATTCCCCCACAATCGGGCCCTGACCGACGAGGTG CAGATGGAGGAGGAGCGCCGGCTCTGCTACGTGGGCATGACCCGGGCGCGCCTGCGGCTCTATCTGACCAACGCTGTCAG CCGCAACCTGTGGGGCCAGTCCAACTACAATGCGCCCAGCCGGTTCCTGCTGGAGATTCCGGCGGAGCTGGTGGAGGAGG TGACCCCGGCCGCCGGTGCGTCCGGGCCGCGCCGGTCCGCCTGGGACGACGGCGCCGCCTGGGAGGACGCCGGGGCGGCT GTGCGGCGGCCGGCGTGGGATGGCGGCGCGCGGGCTGCGCGGCGCCGGGAGTGGGAGGACGACGACTTCTCGCCGGCCAT CGGCGCGGCGGGCTGGGGTCGGACCGCGCAGGCCCGCCGGCTGCAGAAGGCCCTGGAACCGCCGTCCGAGGAGACGCCGC AGTTCCAGCCCGGGGACCGGGTGCGTCACGAGCGGTTCGGTGAGGGCGTGGTGAAGGCCGTCATCGGCGACACCGTGACC GTGCAGTTCGCCGGGGCGGCCGGGCAGCGGGTACTGGTGGCCAGCTACCTGCGCCCGGCCGCGGCCGAGGCGGAGTGA
Upstream 100 bases:
>100_bases ACCGGCGGGCGGGCGAGAAATCCCCCTGTCGTGAGGTAGGTGACCCGCGATCATGCTTGATCCTTCATCTGTTCGTGAGT ACCAGCGCCTGCGGGCCGCG
Downstream 100 bases:
>100_bases CTGGGGAGGGAAGCAGCATGGATCGATCCTGGGCGGAGCGGCGGATCCCGGAACTGATCGAGACCATTCGCCACCATGAG TACCTCTATTACGTGAAGAA
Product: ATP-dependent DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 825; Mature: 825
Protein sequence:
>825_residues MRGRLLSGLNEQQREAVLHGQGPLLILAGAGSGKTRVIAHRIAHLILFGPEYDPDAPPPPGLTADDLEALRLAVEGPGPI DTGAIAHLLGGGIDPWRILAITFTNKAAAEMRERVEQLVGPRAREVWAATFHSTCVRMLRRDIERLGYGRNFVILDAEDQ QAVIRDCLKRLGLSERQFQPGAVLGTISNAKNAMLDPRRFADRAGDYWRQQVAKVYALYQEQLRSGNALDFDDLLLKAVE LLERFDDVREYYQRKFEYILVDEYQDTNHVQNRWVFLLAGEKQNLAVVGDDDQGIYSWRGADISNILEFEAQFPGCRTIK LEQNYRSTQNILSAAYAVVRHNTGRKEKRLWTAAGPGDPVYHFTAADERDEAAFVAREVERLVAEGLPDGTRLDYQDFAV LYRTHAQSRALEEAMVRRSIPYGIYGGLRFFERKEIKDVLAYLRIIANPADIVSFRRAVGVPKRGIGPATVDKLVDYAEQ WQVPVALAALDCSMVPGLSGTYQKRMEEFGALIEELTNLSAHCTVGQLIDAVLERTGILEELRADTSLEAAARLENVQEL RSMAAEFEPPAGEELDGLRDLDSFLATVALLTDADQVGEGQNKVTLMTLHSAKGLEFPVVFLVGLEEGVFPHNRALTDEV QMEEERRLCYVGMTRARLRLYLTNAVSRNLWGQSNYNAPSRFLLEIPAELVEEVTPAAGASGPRRSAWDDGAAWEDAGAA VRRPAWDGGARAARRREWEDDDFSPAIGAAGWGRTAQARRLQKALEPPSEETPQFQPGDRVRHERFGEGVVKAVIGDTVT VQFAGAAGQRVLVASYLRPAAAEAE
Sequences:
>Translated_825_residues MRGRLLSGLNEQQREAVLHGQGPLLILAGAGSGKTRVIAHRIAHLILFGPEYDPDAPPPPGLTADDLEALRLAVEGPGPI DTGAIAHLLGGGIDPWRILAITFTNKAAAEMRERVEQLVGPRAREVWAATFHSTCVRMLRRDIERLGYGRNFVILDAEDQ QAVIRDCLKRLGLSERQFQPGAVLGTISNAKNAMLDPRRFADRAGDYWRQQVAKVYALYQEQLRSGNALDFDDLLLKAVE LLERFDDVREYYQRKFEYILVDEYQDTNHVQNRWVFLLAGEKQNLAVVGDDDQGIYSWRGADISNILEFEAQFPGCRTIK LEQNYRSTQNILSAAYAVVRHNTGRKEKRLWTAAGPGDPVYHFTAADERDEAAFVAREVERLVAEGLPDGTRLDYQDFAV LYRTHAQSRALEEAMVRRSIPYGIYGGLRFFERKEIKDVLAYLRIIANPADIVSFRRAVGVPKRGIGPATVDKLVDYAEQ WQVPVALAALDCSMVPGLSGTYQKRMEEFGALIEELTNLSAHCTVGQLIDAVLERTGILEELRADTSLEAAARLENVQEL RSMAAEFEPPAGEELDGLRDLDSFLATVALLTDADQVGEGQNKVTLMTLHSAKGLEFPVVFLVGLEEGVFPHNRALTDEV QMEEERRLCYVGMTRARLRLYLTNAVSRNLWGQSNYNAPSRFLLEIPAELVEEVTPAAGASGPRRSAWDDGAAWEDAGAA VRRPAWDGGARAARRREWEDDDFSPAIGAAGWGRTAQARRLQKALEPPSEETPQFQPGDRVRHERFGEGVVKAVIGDTVT VQFAGAAGQRVLVASYLRPAAAEAE >Mature_825_residues MRGRLLSGLNEQQREAVLHGQGPLLILAGAGSGKTRVIAHRIAHLILFGPEYDPDAPPPPGLTADDLEALRLAVEGPGPI DTGAIAHLLGGGIDPWRILAITFTNKAAAEMRERVEQLVGPRAREVWAATFHSTCVRMLRRDIERLGYGRNFVILDAEDQ QAVIRDCLKRLGLSERQFQPGAVLGTISNAKNAMLDPRRFADRAGDYWRQQVAKVYALYQEQLRSGNALDFDDLLLKAVE LLERFDDVREYYQRKFEYILVDEYQDTNHVQNRWVFLLAGEKQNLAVVGDDDQGIYSWRGADISNILEFEAQFPGCRTIK LEQNYRSTQNILSAAYAVVRHNTGRKEKRLWTAAGPGDPVYHFTAADERDEAAFVAREVERLVAEGLPDGTRLDYQDFAV LYRTHAQSRALEEAMVRRSIPYGIYGGLRFFERKEIKDVLAYLRIIANPADIVSFRRAVGVPKRGIGPATVDKLVDYAEQ WQVPVALAALDCSMVPGLSGTYQKRMEEFGALIEELTNLSAHCTVGQLIDAVLERTGILEELRADTSLEAAARLENVQEL RSMAAEFEPPAGEELDGLRDLDSFLATVALLTDADQVGEGQNKVTLMTLHSAKGLEFPVVFLVGLEEGVFPHNRALTDEV QMEEERRLCYVGMTRARLRLYLTNAVSRNLWGQSNYNAPSRFLLEIPAELVEEVTPAAGASGPRRSAWDDGAAWEDAGAA VRRPAWDGGARAARRREWEDDDFSPAIGAAGWGRTAQARRLQKALEPPSEETPQFQPGDRVRHERFGEGVVKAVIGDTVT VQFAGAAGQRVLVASYLRPAAAEAE
Specific function: DNA helicase used for plasmid rolling-circle replication and also involved in UV repair [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=699, Percent_Identity=41.0586552217453, Blast_Score=486, Evalue=1e-138, Organism=Escherichia coli, GI48994965, Length=688, Percent_Identity=38.6627906976744, Blast_Score=397, Evalue=1e-111, Organism=Saccharomyces cerevisiae, GI6322369, Length=783, Percent_Identity=28.3524904214559, Blast_Score=234, Evalue=5e-62,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 91612; Mature: 91612
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGRLLSGLNEQQREAVLHGQGPLLILAGAGSGKTRVIAHRIAHLILFGPEYDPDAPPPP CCCCHHCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHEECCCCCCCCCCCC GLTADDLEALRLAVEGPGPIDTGAIAHLLGGGIDPWRILAITFTNKAAAEMRERVEQLVG CCCHHHHHHHHEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHC PRAREVWAATFHSTCVRMLRRDIERLGYGRNFVILDAEDQQAVIRDCLKRLGLSERQFQP CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCC GAVLGTISNAKNAMLDPRRFADRAGDYWRQQVAKVYALYQEQLRSGNALDFDDLLLKAVE CCEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LLERFDDVREYYQRKFEYILVDEYQDTNHVQNRWVFLLAGEKQNLAVVGDDDQGIYSWRG HHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCCCEEEECC ADISNILEFEAQFPGCRTIKLEQNYRSTQNILSAAYAVVRHNTGRKEKRLWTAAGPGDPV CCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCE YHFTAADERDEAAFVAREVERLVAEGLPDGTRLDYQDFAVLYRTHAQSRALEEAMVRRSI EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC PYGIYGGLRFFERKEIKDVLAYLRIIANPADIVSFRRAVGVPKRGIGPATVDKLVDYAEQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH WQVPVALAALDCSMVPGLSGTYQKRMEEFGALIEELTNLSAHCTVGQLIDAVLERTGILE CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH ELRADTSLEAAARLENVQELRSMAAEFEPPAGEELDGLRDLDSFLATVALLTDADQVGEG HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCC QNKVTLMTLHSAKGLEFPVVFLVGLEEGVFPHNRALTDEVQMEEERRLCYVGMTRARLRL CCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCEEEEEHHHHHHHH YLTNAVSRNLWGQSNYNAPSRFLLEIPAELVEEVTPAAGASGPRRSAWDDGAAWEDAGAA HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH VRRPAWDGGARAARRREWEDDDFSPAIGAAGWGRTAQARRLQKALEPPSEETPQFQPGDR HCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH VRHERFGEGVVKAVIGDTVTVQFAGAAGQRVLVASYLRPAAAEAE HHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCCCC >Mature Secondary Structure MRGRLLSGLNEQQREAVLHGQGPLLILAGAGSGKTRVIAHRIAHLILFGPEYDPDAPPPP CCCCHHCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHEECCCCCCCCCCCC GLTADDLEALRLAVEGPGPIDTGAIAHLLGGGIDPWRILAITFTNKAAAEMRERVEQLVG CCCHHHHHHHHEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHC PRAREVWAATFHSTCVRMLRRDIERLGYGRNFVILDAEDQQAVIRDCLKRLGLSERQFQP CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCC GAVLGTISNAKNAMLDPRRFADRAGDYWRQQVAKVYALYQEQLRSGNALDFDDLLLKAVE CCEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LLERFDDVREYYQRKFEYILVDEYQDTNHVQNRWVFLLAGEKQNLAVVGDDDQGIYSWRG HHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCCCEEEECC ADISNILEFEAQFPGCRTIKLEQNYRSTQNILSAAYAVVRHNTGRKEKRLWTAAGPGDPV CCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCE YHFTAADERDEAAFVAREVERLVAEGLPDGTRLDYQDFAVLYRTHAQSRALEEAMVRRSI EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC PYGIYGGLRFFERKEIKDVLAYLRIIANPADIVSFRRAVGVPKRGIGPATVDKLVDYAEQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH WQVPVALAALDCSMVPGLSGTYQKRMEEFGALIEELTNLSAHCTVGQLIDAVLERTGILE CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH ELRADTSLEAAARLENVQELRSMAAEFEPPAGEELDGLRDLDSFLATVALLTDADQVGEG HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCC QNKVTLMTLHSAKGLEFPVVFLVGLEEGVFPHNRALTDEVQMEEERRLCYVGMTRARLRL CCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCEEEEEHHHHHHHH YLTNAVSRNLWGQSNYNAPSRFLLEIPAELVEEVTPAAGASGPRRSAWDDGAAWEDAGAA HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH VRRPAWDGGARAARRREWEDDDFSPAIGAAGWGRTAQARRLQKALEPPSEETPQFQPGDR HCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH VRHERFGEGVVKAVIGDTVTVQFAGAAGQRVLVASYLRPAAAEAE HHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9701819; 9384377 [H]