Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
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Accession | NC_006177 |
Length | 3,566,135 |
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The map label for this gene is cysU [C]
Identifier: 51893889
GI number: 51893889
Start: 2968730
End: 2970433
Strand: Reverse
Name: cysU [C]
Synonym: STH2751
Alternate gene names: 51893889
Gene position: 2970433-2968730 (Counterclockwise)
Preceding gene: 51893890
Following gene: 51893888
Centisome position: 83.3
GC content: 65.61
Gene sequence:
>1704_bases GTGGCAGCCAAGTGGAATGACAGGTGGCAGCGGATCACCGCGTCGCCCTACTTCGTGTACGTGATCGTCGCCCCCCTGGC CCTGGTGCTGTGGGGCTACGTGGTGCAGCCCATGCTGGCCACCTTCCTTGCCAGTGTCCAGGACAGCTCCGGTTTCACCC TGAAGTACTACAGGGGTTTCTTCAGCCTGAACAGCACGCAGATGGAGGCGCTGCTCACCACGGTCGGCATCTCGGTGCTC AGCGTCATCACCTGTGCCGTCGTCGGCGTGAGCATGGCCGTCCTGCTCAACCGGTTCGAGTTCCCCGGGCGCCGCCTGCT GGAGAGCCTGATCCTGGTGCCCATGGCGCTGCCGCCGCTGATCGGCATCTACGCCTTCCAGTTCCTCTACTCGTCCAGCG GCATCATCCCCCGGGCGCTCAAGGTGCTCTTCGACCTGCCCCAGGTCCCCTTCGCCCTGAAGGGGCTCACCGGCGTGCTG GTGGTACACACCTTCACCATGTATCCCTACTTCTACACCTCCGCGGCGGCGGCCCTGGCCGGATTCGACCCCTCGCTGGA GGAGGCGGCGTACAACCTGGGCGCCCGGCGCTGGCAGGTCTGGACCCGGGTGCTGCTGCCGATGCTGACCCCGGCCCTGG TGGCGGGCTCGCTGCTCACCTTCATGGTCTCCATGGCCTCGTACACTGCACCGCTGATCTTCGGCGTCGACCGGATCATG ACCATGCAGATCGCCATCGCCCGCACCAACGGCGACCTGGCGCTGGCTTCGGCGGAGGCGACGGTCCTTTCGGTGGTCTC CATCGCCTTCCTGGTCCTCATGCGCTGGTACCAGAACCGGCGCACCTACCGTTCCCTCTCCAAGGGCGTCTCGGTGCACC GCACCGAGGTCAAGAGCCCGGTGGGCAAGATCCTGGCCATGGTGGCCTCCATCTTCGGCACGCTGATTCTCATCCTGCCC GTCCTCGTCCTCGTCCTGGTCTCGTTCTCCAAGGACGGCTCCTGGACCGTGCAGGTGCTGCCGCCCAAGTACACGCTGGA CAACTACATCACCCTCTTCACCAGCTCGCGGGCATGGCGGCCCATCCGGAACAGCCTGGCGATGAGCGCCCTCGCGACCG TGGGCTCCATCCTGCTGGGCGTGGCCGCGGCCTATGCCCTGAACCGGTTCAAGTTCAAGGGCAAGTCGCTGCTGGACGTG GCCGTCATGATTCCCTGGGCCCTGCCCGGCACGGTGGTCGCGATCAACCTGATCGCCGCCTTCAACCAGCCTTCGGTCTT CACCTTCGGCAAGGTGATCGTGGGCACGTTCTGGATCCTGCCCCTGGCCTACTTCGTCCGCTTCTCGCCGCTGGTCTTCC GCTCCACCAATGCCACGCTGGCGCAGCTGGACCCGTCGGTGGAAGAAGCGGCCCGCAGCCTCGGCGCCACGTGGTGGTAC TCGTTCCGCCGGGTCACCTTCCCGCTGATGTTCCGCGGCGTCCTGGCCGGTGCCCTGATGGCCTTCGTCCAGGGCGTGGG CGAGTTCGTGGCGTCGGTGCTCATCTACACGGCCCGGAACCAGCCGATCTCGGTGGAGATCAACAACCTCATGTACTCGT TCAAGTTCGGCACCGCGGCCGCCTACGGTTTGCTGCAGATGCTCCTGATCCTGGTCGCCATCTACATCTCCAACCGCCTG GAACAGAGGCAGAACCTCGCCTAA
Upstream 100 bases:
>100_bases TCGCCTCGTCGGCCGACCGGTACGGCGAGGTGCGGCGGCCCGGGGATCCCATCCACCTGTACATCCCGCCTGAGCGAGTC TATCTGGTGGAGTGATGAAG
Downstream 100 bases:
>100_bases GGAAGTGATCGCGTTGACCCGCAATCCGAACCCGGCCGGGGCCGCCAACGACCCGTGCCGGAACGAATCCGCCGCACCGC ACGCAGGGGCCGCATCCACC
Product: ABC transporter permease protein
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 567; Mature: 566
Protein sequence:
>567_residues MAAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGFFSLNSTQMEALLTTVGISVL SVITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPLIGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVL VVHTFTMYPYFYTSAAAALAGFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIM TMQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSPVGKILAMVASIFGTLILILP VLVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWRPIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDV AVMIPWALPGTVVAINLIAAFNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWY SFRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAAAYGLLQMLLILVAIYISNRL EQRQNLA
Sequences:
>Translated_567_residues MAAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGFFSLNSTQMEALLTTVGISVL SVITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPLIGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVL VVHTFTMYPYFYTSAAAALAGFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIM TMQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSPVGKILAMVASIFGTLILILP VLVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWRPIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDV AVMIPWALPGTVVAINLIAAFNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWY SFRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAAAYGLLQMLLILVAIYISNRL EQRQNLA >Mature_566_residues AAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGFFSLNSTQMEALLTTVGISVLS VITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPLIGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVLV VHTFTMYPYFYTSAAAALAGFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIMT MQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSPVGKILAMVASIFGTLILILPV LVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWRPIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDVA VMIPWALPGTVVAINLIAAFNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWYS FRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAAAYGLLQMLLILVAIYISNRLE QRQNLA
Specific function: Probably part of the binding-protein-dependent transport system y4fNOP. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1178
COG function: function code P; ABC-type Fe3+ transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transmembrane type-1 domains [H]
Homologues:
Organism=Escherichia coli, GI1788764, Length=204, Percent_Identity=32.843137254902, Blast_Score=86, Evalue=7e-18, Organism=Escherichia coli, GI87082099, Length=243, Percent_Identity=24.2798353909465, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1787369, Length=284, Percent_Identity=27.112676056338, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1786980, Length=172, Percent_Identity=31.3953488372093, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787368, Length=175, Percent_Identity=27.4285714285714, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 62420; Mature: 62289
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGF CCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEEHHH FSLNSTQMEALLTTVGISVLSVITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH IGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVLVVHTFTMYPYFYTSAAAALA HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIM CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSP HEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH VGKILAMVASIFGTLILILPVLVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECCCCCH PIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDVAVMIPWALPGTVVAINLIAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHH FNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWY CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCHHHHHHHHCHHHHH SFRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHEEEEEECHHHH AYGLLQMLLILVAIYISNRLEQRQNLA HHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGF CCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEEHHH FSLNSTQMEALLTTVGISVLSVITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH IGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVLVVHTFTMYPYFYTSAAAALA HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIM CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSP HEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH VGKILAMVASIFGTLILILPVLVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECCCCCH PIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDVAVMIPWALPGTVVAINLIAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHH FNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWY CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCHHHHHHHHCHHHHH SFRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHEEEEEECHHHH AYGLLQMLLILVAIYISNRLEQRQNLA HHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]