Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
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Accession | NC_006177 |
Length | 3,566,135 |
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The map label for this gene is 51893873
Identifier: 51893873
GI number: 51893873
Start: 2938776
End: 2939264
Strand: Reverse
Name: 51893873
Synonym: STH2735
Alternate gene names: NA
Gene position: 2939264-2938776 (Counterclockwise)
Preceding gene: 51893875
Following gene: 51893872
Centisome position: 82.42
GC content: 66.05
Gene sequence:
>489_bases ATGCGGCGTGTCCTGTTTCCCGTGCTCGTCGTCCTTGCGCTTGCGCTGAGCCTGGCTGGCTGCGGCCGGGCGCAGGGGCC CCAGTGGGGCAACCTGAACCTCACCCTGGAGGACGTGCAACAGAACGAGAACCACTGGACGGCCCGGATGGTGCTGAGCA ACCCCACCGACAAGGTGCAGGTCATCGAGTATACCGCCGATGCCCGCTACACCATGATCGTCACGCGCAACGGCCAGACC GTCCTGGAGCAGCCGTTTGACATCCTCAGAGACGGCGACCCGAGGATCCTCAACCTCTCGCCGGGCGTGTCCAAGGAGTA CGTGGTGGCCTGGACCTACCGGAACAAGGAGGGCGAACGGGTCGAGCCGGGCACCTACGAGGTCTCGGTCCGGCTGGATG CGGTGACGGTGGTGCAGGAGGCGGGCAAGACCCAGCCCACTGTCATCGAGCCGCGTACCGTGGGGCCGGTGAAGGTGCAG GTTCAGTAG
Upstream 100 bases:
>100_bases GTGCGTTTTTCCCAGGGCGGGGAGGAGGACGCGGGGCCGTGTCGTATCGCTGTTGGGTAGGGCAAGACTACACTGAGACC ATCGCAGAAGAGGTGCAGAG
Downstream 100 bases:
>100_bases GCGGCACGGTCCGGCGTGGCGGGGCTGCCGGGCCGTGGCGGTACCGACCGGAGCCGCGCCGCCCACCGGGGCGCGGCCGG GTCCGCGCGCCTGCGCGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MRRVLFPVLVVLALALSLAGCGRAQGPQWGNLNLTLEDVQQNENHWTARMVLSNPTDKVQVIEYTADARYTMIVTRNGQT VLEQPFDILRDGDPRILNLSPGVSKEYVVAWTYRNKEGERVEPGTYEVSVRLDAVTVVQEAGKTQPTVIEPRTVGPVKVQ VQ
Sequences:
>Translated_162_residues MRRVLFPVLVVLALALSLAGCGRAQGPQWGNLNLTLEDVQQNENHWTARMVLSNPTDKVQVIEYTADARYTMIVTRNGQT VLEQPFDILRDGDPRILNLSPGVSKEYVVAWTYRNKEGERVEPGTYEVSVRLDAVTVVQEAGKTQPTVIEPRTVGPVKVQ VQ >Mature_162_residues MRRVLFPVLVVLALALSLAGCGRAQGPQWGNLNLTLEDVQQNENHWTARMVLSNPTDKVQVIEYTADARYTMIVTRNGQT VLEQPFDILRDGDPRILNLSPGVSKEYVVAWTYRNKEGERVEPGTYEVSVRLDAVTVVQEAGKTQPTVIEPRTVGPVKVQ VQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18086; Mature: 18086
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVLFPVLVVLALALSLAGCGRAQGPQWGNLNLTLEDVQQNENHWTARMVLSNPTDKVQ CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEE VIEYTADARYTMIVTRNGQTVLEQPFDILRDGDPRILNLSPGVSKEYVVAWTYRNKEGER EEEEECCCEEEEEEEECCCCHHHCCHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCCCE VEPGTYEVSVRLDAVTVVQEAGKTQPTVIEPRTVGPVKVQVQ ECCCEEEEEEEEEEEEEEHHCCCCCCEEECCCCCCCEEEEEC >Mature Secondary Structure MRRVLFPVLVVLALALSLAGCGRAQGPQWGNLNLTLEDVQQNENHWTARMVLSNPTDKVQ CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEE VIEYTADARYTMIVTRNGQTVLEQPFDILRDGDPRILNLSPGVSKEYVVAWTYRNKEGER EEEEECCCEEEEEEEECCCCHHHCCHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCCCE VEPGTYEVSVRLDAVTVVQEAGKTQPTVIEPRTVGPVKVQVQ ECCCEEEEEEEEEEEEEEHHCCCCCCEEECCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA