Click here to switch to the map view.

The map label for this gene is ydaV [C]

Identifier: 51893836

GI number: 51893836

Start: 2889251

End: 2890024

Strand: Reverse

Name: ydaV [C]

Synonym: STH2698

Alternate gene names: 51893836

Gene position: 2890024-2889251 (Counterclockwise)

Preceding gene: 51893837

Following gene: 51893835

Centisome position: 81.04

GC content: 59.3

Gene sequence:

>774_bases
TTGAGCCAGGAACTCCTGCTGGACTACTACCTGAAGCGCCTGAAACTCCCCACAGTCCGGCGGCTGTACAAGGAGCTGGC
GCGGGATGCAGCAGAGCACAACAAGACATTTGAGGAGTACCTACAAGCGCTCATGGAACAGGAGGTGATCCATCGGGAAG
ACAACCAACTCCAGCGCCGTCTCAAGGCCGCCGGCTTCCCTGTTCCCAAAACACTGGAGTCCTTCGACTTCACGGTCATG
CCGTCCGTGAACAAGGCCAAGATCCTGGCGCTGAGCAAGAGTGAATACATCCGGGATCGGGAAAACATCCTCCTTGTTGG
AAACAGCGGGACAGGTAAGACTCACCTAGCTACAGCACTCGGCATCGCAGCGTGCCGACAGGGCTACCGCGTTCGCTTCT
GGCGCGTGGGCCAGTTCGTTGCCGAACTGCAGGAGGCGCAGAACGAGCACCGCCTCAGCCGCCTCGAAAAGCAGTGGCTA
CGGTTCGACCTCGTCGTGCTGGACGAGCTTGGCTATGTGTCCCTCAGCCGCCCGGCCAGTGAACTGCTCTTCCACTTTGT
CGCCGCACGGTACGAGCGGGGCAGCCTGATCATCACGACGAACCTGGAATTCTCGGAATGGCCGCAGGTGTTCGGGGACC
AGAAGATGACAGCAGCGTTGGCAGACCGTGTGACTCACAAGGCCCACATCATCGAGATGAATGGGGAGTCGTACCGGTTC
CGTGAGACCCTTCGACGGCAGGAAGCTTTGAAGCACCACCCGGAAACACCGTAA

Upstream 100 bases:

>100_bases
CCGAGGCATCGACCTCCACCGCCGGGGAACTGGCCGGCATTCGGGTCCAGCAACCCTCACTGGCCGAGTACAACCGGCTC
CTGAAAGGGGGTGTGGTGCA

Downstream 100 bases:

>100_bases
GCCCCGCAGGTATAAACTGGCAACCCGCCAACTGGAAACCGCAATGGAAGCAAAAACAGCCCTGTAGGGCTGTCAGGTGG
CTCACTTTTGGATGATCAAA

Product: IS21 family transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSQELLLDYYLKRLKLPTVRRLYKELARDAAEHNKTFEEYLQALMEQEVIHREDNQLQRRLKAAGFPVPKTLESFDFTVM
PSVNKAKILALSKSEYIRDRENILLVGNSGTGKTHLATALGIAACRQGYRVRFWRVGQFVAELQEAQNEHRLSRLEKQWL
RFDLVVLDELGYVSLSRPASELLFHFVAARYERGSLIITTNLEFSEWPQVFGDQKMTAALADRVTHKAHIIEMNGESYRF
RETLRRQEALKHHPETP

Sequences:

>Translated_257_residues
MSQELLLDYYLKRLKLPTVRRLYKELARDAAEHNKTFEEYLQALMEQEVIHREDNQLQRRLKAAGFPVPKTLESFDFTVM
PSVNKAKILALSKSEYIRDRENILLVGNSGTGKTHLATALGIAACRQGYRVRFWRVGQFVAELQEAQNEHRLSRLEKQWL
RFDLVVLDELGYVSLSRPASELLFHFVAARYERGSLIITTNLEFSEWPQVFGDQKMTAALADRVTHKAHIIEMNGESYRF
RETLRRQEALKHHPETP
>Mature_256_residues
SQELLLDYYLKRLKLPTVRRLYKELARDAAEHNKTFEEYLQALMEQEVIHREDNQLQRRLKAAGFPVPKTLESFDFTVMP
SVNKAKILALSKSEYIRDRENILLVGNSGTGKTHLATALGIAACRQGYRVRFWRVGQFVAELQEAQNEHRLSRLEKQWLR
FDLVVLDELGYVSLSRPASELLFHFVAARYERGSLIITTNLEFSEWPQVFGDQKMTAALADRVTHKAHIIEMNGESYRFR
ETLRRQEALKHHPETP

Specific function: Unknown

COG id: COG1484

COG function: function code L; DNA replication protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IS21/IS1162 putative ATP-binding protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR002611 [H]

Pfam domain/function: PF01695 IstB [H]

EC number: NA

Molecular weight: Translated: 29958; Mature: 29827

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQELLLDYYLKRLKLPTVRRLYKELARDAAEHNKTFEEYLQALMEQEVIHREDNQLQRR
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHH
LKAAGFPVPKTLESFDFTVMPSVNKAKILALSKSEYIRDRENILLVGNSGTGKTHLATAL
HHHCCCCCCCHHHHCCEEECCCCCCCEEEEECHHHHHCCCCCEEEEECCCCCHHHHHHHH
GIAACRQGYRVRFWRVGQFVAELQEAQNEHRLSRLEKQWLRFDLVVLDELGYVSLSRPAS
HHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHH
ELLFHFVAARYERGSLIITTNLEFSEWPQVFGDQKMTAALADRVTHKAHIIEMNGESYRF
HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCCHHH
RETLRRQEALKHHPETP
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SQELLLDYYLKRLKLPTVRRLYKELARDAAEHNKTFEEYLQALMEQEVIHREDNQLQRR
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHH
LKAAGFPVPKTLESFDFTVMPSVNKAKILALSKSEYIRDRENILLVGNSGTGKTHLATAL
HHHCCCCCCCHHHHCCEEECCCCCCCEEEEECHHHHHCCCCCEEEEECCCCCHHHHHHHH
GIAACRQGYRVRFWRVGQFVAELQEAQNEHRLSRLEKQWLRFDLVVLDELGYVSLSRPAS
HHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHH
ELLFHFVAARYERGSLIITTNLEFSEWPQVFGDQKMTAALADRVTHKAHIIEMNGESYRF
HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCCHHH
RETLRRQEALKHHPETP
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]