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The map label for this gene is ysdC [H]

Identifier: 51893813

GI number: 51893813

Start: 2863780

End: 2864880

Strand: Reverse

Name: ysdC [H]

Synonym: STH2675

Alternate gene names: 51893813

Gene position: 2864880-2863780 (Counterclockwise)

Preceding gene: 51893816

Following gene: 51893809

Centisome position: 80.34

GC content: 66.58

Gene sequence:

>1101_bases
ATGGAGAGGGAGGCCCAACTGGTGGATCAACGGCTGAAGATGTATGAGGAGCTCACCAGCGCGAACGGGATCTCCGGCTT
CGAGGAGCCCGTTCGGCAGGTGATGCGCAAGTACCTGGAGCCGCTCTGCGACGAGATCATCAGTGACAACCTGGGATCCA
TCGCCGGCATTAAGAAGGGGCAGGCCGGTGGTCCCCGCATCATGCTGGCCGGGCACCTCGATGAGGTGGGCTGGATGGTC
ACGCAGATCACCGACAAGGGGTTCCTGAAGATCCAGCCCGTCGGCGGCTGGTGGAGCCAGGTCATGCTGGCCCAGCGGGT
CAAGGTCCTGACCCGCAAGGGCGAGCTCATCGGCGTGGTCGGGTCCAAGCCGCCGCACATCCTCACCCAGGAGGAGCGGA
ACAAGGTCGTCCAGATCAAGGACATGTTCATCGACATCGGCGCCAGCTCCAAGGAGGAGGCCCAGGAGTGGGGCGTGCGG
CCGGGCGATCCGATCGTGCCCTACTGCGACTTCCACGTGATGCCCAACCCCAAGATCCTGATGAACAAGGCGTGGGACAA
CCGTGCCGGCTGCGCGGTGGCGATCATGGTGCTGGAGGAGCTGAAGGGCCAGGACCATCCCAACGAGGTCTACGCGGTGG
GCACGGTCCAGGAGGAGGTCGGCCTGCGCGGCGCGACCACCATGGCCAACACCATCGAGCCGGACATCGCCTTTGCGCTG
GACGTCGGCCTGGCCACGGACGTCCCCGGCGGCGACGGCCAGGTGGAGGGCAAGATGGGGGCGGGCCCGCTGATCATGAT
CTACGACGCCTCGATGGTGCCGCACCGCGGCCTGCGTGACCTGGTGATCGACACCGCCGAGGAGCTGGAGATTCCCATCC
AGTTCCAGGCCATGGCCGGAGGCGGTACCGACGCCGGCCGGATCCACATCCAGGGGCGGGGCGTGCCGTCGCTGGCCGTG
GGCTTCGCCACCCGGTACATCCACAGCCACGCGGCGCTGATCCACCGGGACGACATGGAGAACGCCGCCAAGCTGCTGGC
GGCGGTCATCAAGAAGCTGGACGCCGAGACGGTGGCGCGCCTGAAGAACAACCTGAGCTAG

Upstream 100 bases:

>100_bases
GGGGCGCAATAGACTAAAGTCCCATTGCCGCTAGGGAGTAGGCAGGGGATTTCCGACGGGTGGTTGAATTAACCACAAGC
CTCGTCAAGTACATCCATCG

Downstream 100 bases:

>100_bases
CGCGCAGAGCTTGGACGCCAACGAGCGAGCCGGGCGGGGATCGACCCCTGCCCGGCTTCTTTCATCCCACCGGCACGGAC
CGGCGGCGATGCTCGGCCAG

Product: endo-1,4-beta-glucanase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MEREAQLVDQRLKMYEELTSANGISGFEEPVRQVMRKYLEPLCDEIISDNLGSIAGIKKGQAGGPRIMLAGHLDEVGWMV
TQITDKGFLKIQPVGGWWSQVMLAQRVKVLTRKGELIGVVGSKPPHILTQEERNKVVQIKDMFIDIGASSKEEAQEWGVR
PGDPIVPYCDFHVMPNPKILMNKAWDNRAGCAVAIMVLEELKGQDHPNEVYAVGTVQEEVGLRGATTMANTIEPDIAFAL
DVGLATDVPGGDGQVEGKMGAGPLIMIYDASMVPHRGLRDLVIDTAEELEIPIQFQAMAGGGTDAGRIHIQGRGVPSLAV
GFATRYIHSHAALIHRDDMENAAKLLAAVIKKLDAETVARLKNNLS

Sequences:

>Translated_366_residues
MEREAQLVDQRLKMYEELTSANGISGFEEPVRQVMRKYLEPLCDEIISDNLGSIAGIKKGQAGGPRIMLAGHLDEVGWMV
TQITDKGFLKIQPVGGWWSQVMLAQRVKVLTRKGELIGVVGSKPPHILTQEERNKVVQIKDMFIDIGASSKEEAQEWGVR
PGDPIVPYCDFHVMPNPKILMNKAWDNRAGCAVAIMVLEELKGQDHPNEVYAVGTVQEEVGLRGATTMANTIEPDIAFAL
DVGLATDVPGGDGQVEGKMGAGPLIMIYDASMVPHRGLRDLVIDTAEELEIPIQFQAMAGGGTDAGRIHIQGRGVPSLAV
GFATRYIHSHAALIHRDDMENAAKLLAAVIKKLDAETVARLKNNLS
>Mature_366_residues
MEREAQLVDQRLKMYEELTSANGISGFEEPVRQVMRKYLEPLCDEIISDNLGSIAGIKKGQAGGPRIMLAGHLDEVGWMV
TQITDKGFLKIQPVGGWWSQVMLAQRVKVLTRKGELIGVVGSKPPHILTQEERNKVVQIKDMFIDIGASSKEEAQEWGVR
PGDPIVPYCDFHVMPNPKILMNKAWDNRAGCAVAIMVLEELKGQDHPNEVYAVGTVQEEVGLRGATTMANTIEPDIAFAL
DVGLATDVPGGDGQVEGKMGAGPLIMIYDASMVPHRGLRDLVIDTAEELEIPIQFQAMAGGGTDAGRIHIQGRGVPSLAV
GFATRYIHSHAALIHRDDMENAAKLLAAVIKKLDAETVARLKNNLS

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=351, Percent_Identity=40.1709401709402, Blast_Score=261, Evalue=5e-71,
Organism=Escherichia coli, GI1788727, Length=353, Percent_Identity=33.4277620396601, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI87082417, Length=343, Percent_Identity=30.6122448979592, Blast_Score=154, Evalue=6e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39858; Mature: 39858

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEREAQLVDQRLKMYEELTSANGISGFEEPVRQVMRKYLEPLCDEIISDNLGSIAGIKKG
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCC
QAGGPRIMLAGHLDEVGWMVTQITDKGFLKIQPVGGWWSQVMLAQRVKVLTRKGELIGVV
CCCCCEEEEEECCHHHHHEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
GSKPPHILTQEERNKVVQIKDMFIDIGASSKEEAQEWGVRPGDPIVPYCDFHVMPNPKIL
CCCCCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCEE
MNKAWDNRAGCAVAIMVLEELKGQDHPNEVYAVGTVQEEVGLRGATTMANTIEPDIAFAL
EECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCCCCHHHHHCCCCCEEEEE
DVGLATDVPGGDGQVEGKMGAGPLIMIYDASMVPHRGLRDLVIDTAEELEIPIQFQAMAG
ECCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCHHHHHCCHHHCCCCEEEEEEEC
GGTDAGRIHIQGRGVPSLAVGFATRYIHSHAALIHRDDMENAAKLLAAVIKKLDAETVAR
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCHHHHHH
LKNNLS
HHHCCC
>Mature Secondary Structure
MEREAQLVDQRLKMYEELTSANGISGFEEPVRQVMRKYLEPLCDEIISDNLGSIAGIKKG
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCC
QAGGPRIMLAGHLDEVGWMVTQITDKGFLKIQPVGGWWSQVMLAQRVKVLTRKGELIGVV
CCCCCEEEEEECCHHHHHEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
GSKPPHILTQEERNKVVQIKDMFIDIGASSKEEAQEWGVRPGDPIVPYCDFHVMPNPKIL
CCCCCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCEE
MNKAWDNRAGCAVAIMVLEELKGQDHPNEVYAVGTVQEEVGLRGATTMANTIEPDIAFAL
EECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCCCCHHHHHCCCCCEEEEE
DVGLATDVPGGDGQVEGKMGAGPLIMIYDASMVPHRGLRDLVIDTAEELEIPIQFQAMAG
ECCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCHHHHHCCHHHCCCCEEEEEEEC
GGTDAGRIHIQGRGVPSLAVGFATRYIHSHAALIHRDDMENAAKLLAAVIKKLDAETVAR
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCHHHHHH
LKNNLS
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]