Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
---|---|
Accession | NC_006155 |
Length | 4,744,671 |
Click here to switch to the map view.
The map label for this gene is 51597449
Identifier: 51597449
GI number: 51597449
Start: 3696877
End: 3697203
Strand: Reverse
Name: 51597449
Synonym: YPTB3138
Alternate gene names: NA
Gene position: 3697203-3696877 (Counterclockwise)
Preceding gene: 51597450
Following gene: 51597441
Centisome position: 77.92
GC content: 42.81
Gene sequence:
>327_bases TTGAGCAAAAATAAGCTAAAATCACGGAAGTTAACAGAAATAGCTTTCGGAGTGGTTAATATGCGAATGTTCAAGATTAA ATGCACAGAATGCCGCGCACCCGCAATTATCCGCAAAACAGAATGGAAAGACGTAAAAGTTGCCGATTTGTATTGTGCCT GTTCCAATGTTGAGTGCGGCCATACCTTTGTATTTAACGCGGTATTCTCGCACTCACTCAGTCCCAGCGGGTTAACGGGT AGTAAGTTGGTAATGGCTTTGCTTGAAATGTTGAAGCCGGATGAAAGGCAGATAGCCTTAGATTTACTGCAAAATCAGCC GGTATGA
Upstream 100 bases:
>100_bases AGTTTATGCGTGCCGTGAATACCGATCCCGAGACACCCGCCCATTTACACCTGCGATTTAAAGCAGATAAAGACACGGAT AACACCGAAAGGGGCGAAAA
Downstream 100 bases:
>100_bases TTCTGTATAAGTTAATCATAATATGATTGTTTACATCGTTTTTTTGAGAAACCCGCGAAAGCGGGTTTTTTTATGGGCTA AATGCTGAAATGTGACATAT
Product: hypothetical protein
Products: NA
Alternate protein names: Transcriptional Activator Ogr/Delta; Zinc-Finger Protein; Phage Gene; Phage Protein; Phage-Like Protein; Bacteriophage Transcription Regulator Protein
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MSKNKLKSRKLTEIAFGVVNMRMFKIKCTECRAPAIIRKTEWKDVKVADLYCACSNVECGHTFVFNAVFSHSLSPSGLTG SKLVMALLEMLKPDERQIALDLLQNQPV
Sequences:
>Translated_108_residues MSKNKLKSRKLTEIAFGVVNMRMFKIKCTECRAPAIIRKTEWKDVKVADLYCACSNVECGHTFVFNAVFSHSLSPSGLTG SKLVMALLEMLKPDERQIALDLLQNQPV >Mature_107_residues SKNKLKSRKLTEIAFGVVNMRMFKIKCTECRAPAIIRKTEWKDVKVADLYCACSNVECGHTFVFNAVFSHSLSPSGLTGS KLVMALLEMLKPDERQIALDLLQNQPV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12134; Mature: 12002
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.6 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 9.3 %Cys+Met (Translated Protein) 4.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 8.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKNKLKSRKLTEIAFGVVNMRMFKIKCTECRAPAIIRKTEWKDVKVADLYCACSNVECG CCCCCCCHHHHHHHHHHHHCEEEEEEEECCCCCCEEEECCCCCCEEEEEEEEEECCCCCC HTFVFNAVFSHSLSPSGLTGSKLVMALLEMLKPDERQIALDLLQNQPV HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCC >Mature Secondary Structure SKNKLKSRKLTEIAFGVVNMRMFKIKCTECRAPAIIRKTEWKDVKVADLYCACSNVECG CCCCCCHHHHHHHHHHHHCEEEEEEEECCCCCCEEEECCCCCCEEEEEEEEEECCCCCC HTFVFNAVFSHSLSPSGLTGSKLVMALLEMLKPDERQIALDLLQNQPV HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA