| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is mrcB
Identifier: 51595088
GI number: 51595088
Start: 885265
End: 887745
Strand: Direct
Name: mrcB
Synonym: YPTB0738
Alternate gene names: 51595088
Gene position: 885265-887745 (Clockwise)
Preceding gene: 161760587
Following gene: 51595089
Centisome position: 18.66
GC content: 53.37
Gene sequence:
>2481_bases ATGTCTGGGGACGATCGTGAGCCGATAGGGCGCAAGGGCAAGAAAGCCCAACCCAAAGCAGCACCAAAACGTCCACTGCG CCGTCGGCGTGATGAAGATGAATACGAAGAAGATTATGACGAAGAACAAAATGATGATGATTATGATGACGAGGAGGAGC CGATGCCAAGAAAAGTAGCATCACGCCCACCTCGCAAGAAACGCCGTTGGCTCGGGTTGTTGATCAAACTGTTCCTGATT GGGGCCGTGGCTTTGGCGATCTATGGGGTTTACCTCGATTCGCAAATCCGCAGCCGTATTGATGGCAAAGTCTGGCAATT ACCGGCTGCCGTGTATGGCCGCATGGTCAATCTTGAGCCGGGTATGTCCTACAGCAAAAAAGAGATGATCGCCTTGCTGG AAGGGATGCAATACCGTCAGGTCAGCCGCATGACCCGCCCTGGGGAGTTCACGGTTCAGAACGACAGTATCGATATCTTG CGCCGGCCGTTCGATTTCCCTGATGGTAAAGAAGGCCAAATTCGCGCCCGTTTACTGTTCAAAAATGATCGTCTGGCCCA GATTCAAAACCTGGATAATCAGCGTGATTTCGGGCTATTCCGCCTCGATCCCAAGTTGATTACCATGCTGCAATCACCTA ACGGTGAACAGCGTCTGTTTGTTCCGCGCGCCGGGTTCCCTGATTTGCTGGTGGACACCTTGCTGGCGACTGAAGACCGC CATTTCTATGAGCATGATGGCGTCAGCCCGTATTCCATTGCTCGAGCCGTGGTCGCTAACCTGACAGCCGGTAAAGCGGT GCAGGGGGGCAGTACGCTGACGCAACAGTTAGTGAAAAACCTGTTCCTGACCAATGAACGTTCGCTGGTACGTAAACTTA ACGAGGCCTATATGGCCCTGTTGATGGATTATCGCTACAGCAAAGATCGGATCTTGGAACTCTATCTGAACGAAGTCTAT CTTGGTCAGAGTGGTGGTGACCAAATCCGTGGCTTCCCGCTGGGTAGCTTGTATTACTTTGGCCGCCCGGTTGATGAATT GAGTCTCGATCAGCAAGCCATGTTGGTTGGCATGGTGAAAGGGGCCTCACTGTATAACCCGTGGCGTAATCCTAAGCTGG CACTTGAGCGGCGTAATTTGGTCCTGCGCTTGTTGCAGAATCAAGGGATTATCGATGCTGAGCTTTACACCATGCTCAGT GCCCGTCCGTTGGGGGTGCAGCCGAAAGGCGGAGTCATCACACCTCAACCTGCTTTTATGCAGATGGTGCGCCAGGAGCT GCAACAGAAGTTGGGTAACAAGGTCAATGATCTGTCTGGCGTGAAGATCTTCACCACCTTGGATCCGGTTTCACAAGATG CCGCAGAAAAAGCCATCGAAGACGGTGTTCCGGCGCTGAGAGCCGCCCGTAATATGAATGACCTGGAAGCGGCGATGGTG GTGGTTGACCGTTTCAGTGGCGAAGTGCGTGCCATGGTGGGCGGTTCACAGCCACAATTTGCCGGTTTTAACCGTGCGAT GCAGGCCCGCCGTTTGGTGGGGTCACTTGCCAAACCACCAACCTATCTGGCCGCGTTGAGTGAGCCAGATAAGTACCGCC TCAATACCTGGCTTTCGGACCAACCGCTGTCGCTTAAATTATCGAACGGTTCATTGTGGCAGCCGAAAAACTATGATCGC CAGTTCCGTGGTCAGGTCATGTTGATGGATGCGTTGGTGAACTCACTGAACATCCCAACAGTCAATTTGGGGATGTCAGT GGGCTTAGATCAGATCAGCGCCACACTGCAACGCCTTGGGATCCCGAAATCAGTCATTAATCCGGTCCCAGCCATGTTAT TGGGGGCGATTGACCTGACTCCGGTTGAAGTTGCGCAGGAGTATCAGACGATCGCCAGTGGTGGCAACCGTGCACCGTTG TCGGCTGTGCGTTCGGTTATTGCTGAGGATGGGACCGTGCTGTATCAGAGCTTCCCACAGGCAGAACGTATGGTGCCTGC ACAAGCTTCTTACCTGACGCTGTATGCGATGCAGCAAGGGGTTGTCCGTGGTACATCACGCTCTCTCTCGGCGAAGTTCG GCAAATATAATCTGGCGGCCAAAACCGGGACAACCAACGATCTGCGTGACAGTTGGTTTGCCGGTATTGATGGCAAAGAA GTGACCATTGCCTGGATTGGGCGCGATAATAACGGCCCGACTAAGCTGACCGGGGCCAGCGGCGCGCTAACCTTGTATCG CCGCTATCTGGAAAACCAAACGCCGTTGCCGCTGATTCTGCAACCGCCAGAAGGCATTAGCCAAATGAACATTGATTCGG CGGGGAACTTCGTCTGTGGTGAAGGGAGCGGGATGCGCGTCATTCCTGTTTGGACCGAAAATCCGCAAGCTTTGTGTCAG GGATCCGCACCCACTCAAGACCCCACAAAACCTAACGATGATGGTGTTGCCGATTGGATCAAAGAGATGTTTGGCCAATA A
Upstream 100 bases:
>100_bases GGCTGATAGCCAATAAATTCAGATGTTTCTCGTTTCTATCCGGTGAATTGGGGAACACATTAAGCCGCAATAATCACCAA TGCGCGTGGAGATAGGAAAC
Downstream 100 bases:
>100_bases AATGTGTGGTCAATAAAATGTGACGGCGGGCGTGGTTTACAGACTGCGCCCGCCAATTTTTTTCTTTGCGCTTCCCTTCT TCGTTTCCCCCAACAAATCA
Product: penicillin-binding protein 1b
Products: NA
Alternate protein names: PBP-1b; PBP1b; Murein polymerase; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Peptidoglycan glycosyltransferase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 826; Mature: 825
Protein sequence:
>826_residues MSGDDREPIGRKGKKAQPKAAPKRPLRRRRDEDEYEEDYDEEQNDDDYDDEEEPMPRKVASRPPRKKRRWLGLLIKLFLI GAVALAIYGVYLDSQIRSRIDGKVWQLPAAVYGRMVNLEPGMSYSKKEMIALLEGMQYRQVSRMTRPGEFTVQNDSIDIL RRPFDFPDGKEGQIRARLLFKNDRLAQIQNLDNQRDFGLFRLDPKLITMLQSPNGEQRLFVPRAGFPDLLVDTLLATEDR HFYEHDGVSPYSIARAVVANLTAGKAVQGGSTLTQQLVKNLFLTNERSLVRKLNEAYMALLMDYRYSKDRILELYLNEVY LGQSGGDQIRGFPLGSLYYFGRPVDELSLDQQAMLVGMVKGASLYNPWRNPKLALERRNLVLRLLQNQGIIDAELYTMLS ARPLGVQPKGGVITPQPAFMQMVRQELQQKLGNKVNDLSGVKIFTTLDPVSQDAAEKAIEDGVPALRAARNMNDLEAAMV VVDRFSGEVRAMVGGSQPQFAGFNRAMQARRLVGSLAKPPTYLAALSEPDKYRLNTWLSDQPLSLKLSNGSLWQPKNYDR QFRGQVMLMDALVNSLNIPTVNLGMSVGLDQISATLQRLGIPKSVINPVPAMLLGAIDLTPVEVAQEYQTIASGGNRAPL SAVRSVIAEDGTVLYQSFPQAERMVPAQASYLTLYAMQQGVVRGTSRSLSAKFGKYNLAAKTGTTNDLRDSWFAGIDGKE VTIAWIGRDNNGPTKLTGASGALTLYRRYLENQTPLPLILQPPEGISQMNIDSAGNFVCGEGSGMRVIPVWTENPQALCQ GSAPTQDPTKPNDDGVADWIKEMFGQ
Sequences:
>Translated_826_residues MSGDDREPIGRKGKKAQPKAAPKRPLRRRRDEDEYEEDYDEEQNDDDYDDEEEPMPRKVASRPPRKKRRWLGLLIKLFLI GAVALAIYGVYLDSQIRSRIDGKVWQLPAAVYGRMVNLEPGMSYSKKEMIALLEGMQYRQVSRMTRPGEFTVQNDSIDIL RRPFDFPDGKEGQIRARLLFKNDRLAQIQNLDNQRDFGLFRLDPKLITMLQSPNGEQRLFVPRAGFPDLLVDTLLATEDR HFYEHDGVSPYSIARAVVANLTAGKAVQGGSTLTQQLVKNLFLTNERSLVRKLNEAYMALLMDYRYSKDRILELYLNEVY LGQSGGDQIRGFPLGSLYYFGRPVDELSLDQQAMLVGMVKGASLYNPWRNPKLALERRNLVLRLLQNQGIIDAELYTMLS ARPLGVQPKGGVITPQPAFMQMVRQELQQKLGNKVNDLSGVKIFTTLDPVSQDAAEKAIEDGVPALRAARNMNDLEAAMV VVDRFSGEVRAMVGGSQPQFAGFNRAMQARRLVGSLAKPPTYLAALSEPDKYRLNTWLSDQPLSLKLSNGSLWQPKNYDR QFRGQVMLMDALVNSLNIPTVNLGMSVGLDQISATLQRLGIPKSVINPVPAMLLGAIDLTPVEVAQEYQTIASGGNRAPL SAVRSVIAEDGTVLYQSFPQAERMVPAQASYLTLYAMQQGVVRGTSRSLSAKFGKYNLAAKTGTTNDLRDSWFAGIDGKE VTIAWIGRDNNGPTKLTGASGALTLYRRYLENQTPLPLILQPPEGISQMNIDSAGNFVCGEGSGMRVIPVWTENPQALCQ GSAPTQDPTKPNDDGVADWIKEMFGQ >Mature_825_residues SGDDREPIGRKGKKAQPKAAPKRPLRRRRDEDEYEEDYDEEQNDDDYDDEEEPMPRKVASRPPRKKRRWLGLLIKLFLIG AVALAIYGVYLDSQIRSRIDGKVWQLPAAVYGRMVNLEPGMSYSKKEMIALLEGMQYRQVSRMTRPGEFTVQNDSIDILR RPFDFPDGKEGQIRARLLFKNDRLAQIQNLDNQRDFGLFRLDPKLITMLQSPNGEQRLFVPRAGFPDLLVDTLLATEDRH FYEHDGVSPYSIARAVVANLTAGKAVQGGSTLTQQLVKNLFLTNERSLVRKLNEAYMALLMDYRYSKDRILELYLNEVYL GQSGGDQIRGFPLGSLYYFGRPVDELSLDQQAMLVGMVKGASLYNPWRNPKLALERRNLVLRLLQNQGIIDAELYTMLSA RPLGVQPKGGVITPQPAFMQMVRQELQQKLGNKVNDLSGVKIFTTLDPVSQDAAEKAIEDGVPALRAARNMNDLEAAMVV VDRFSGEVRAMVGGSQPQFAGFNRAMQARRLVGSLAKPPTYLAALSEPDKYRLNTWLSDQPLSLKLSNGSLWQPKNYDRQ FRGQVMLMDALVNSLNIPTVNLGMSVGLDQISATLQRLGIPKSVINPVPAMLLGAIDLTPVEVAQEYQTIASGGNRAPLS AVRSVIAEDGTVLYQSFPQAERMVPAQASYLTLYAMQQGVVRGTSRSLSAKFGKYNLAAKTGTTNDLRDSWFAGIDGKEV TIAWIGRDNNGPTKLTGASGALTLYRRYLENQTPLPLILQPPEGISQMNIDSAGNFVCGEGSGMRVIPVWTENPQALCQG SAPTQDPTKPNDDGVADWIKEMFGQ
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=853, Percent_Identity=68.5814771395076, Blast_Score=1126, Evalue=0.0, Organism=Escherichia coli, GI87082258, Length=283, Percent_Identity=34.6289752650177, Blast_Score=161, Evalue=2e-40, Organism=Escherichia coli, GI1788867, Length=512, Percent_Identity=28.515625, Blast_Score=151, Evalue=2e-37, Organism=Escherichia coli, GI1789601, Length=127, Percent_Identity=36.2204724409449, Blast_Score=77, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011813 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: =2.4.1.129 [H]
Molecular weight: Translated: 92018; Mature: 91886
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGDDREPIGRKGKKAQPKAAPKRPLRRRRDEDEYEEDYDEEQNDDDYDDEEEPMPRKVA CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH SRPPRKKRRWLGLLIKLFLIGAVALAIYGVYLDSQIRSRIDGKVWQLPAAVYGRMVNLEP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECHHHHCEEEECCC GMSYSKKEMIALLEGMQYRQVSRMTRPGEFTVQNDSIDILRRPFDFPDGKEGQIRARLLF CCCCHHHHHHHHHHCHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCCCCCCCEEEEEEE KNDRLAQIQNLDNQRDFGLFRLDPKLITMLQSPNGEQRLFVPRAGFPDLLVDTLLATEDR CCCCHHHHHCCCCCCCCCEEEECHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCC HFYEHDGVSPYSIARAVVANLTAGKAVQGGSTLTQQLVKNLFLTNERSLVRKLNEAYMAL CHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LMDYRYSKDRILELYLNEVYLGQSGGDQIRGFPLGSLYYFGRPVDELSLDQQAMLVGMVK HHHHCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHCCCCCHHHHCCCHHHHHHHHHC GASLYNPWRNPKLALERRNLVLRLLQNQGIIDAELYTMLSARPLGVQPKGGVITPQPAFM CCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHH QMVRQELQQKLGNKVNDLSGVKIFTTLDPVSQDAAEKAIEDGVPALRAARNMNDLEAAMV HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHH VVDRFSGEVRAMVGGSQPQFAGFNRAMQARRLVGSLAKPPTYLAALSEPDKYRLNTWLSD HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCC QPLSLKLSNGSLWQPKNYDRQFRGQVMLMDALVNSLNIPTVNLGMSVGLDQISATLQRLG CCCEEEECCCCCCCCCCCCHHHCCCEEEHHHHHHHCCCCEEECCHHCCHHHHHHHHHHHC IPKSVINPVPAMLLGAIDLTPVEVAQEYQTIASGGNRAPLSAVRSVIAEDGTVLYQSFPQ CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCH AERMVPAQASYLTLYAMQQGVVRGTSRSLSAKFGKYNLAAKTGTTNDLRDSWFAGIDGKE HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCE VTIAWIGRDNNGPTKLTGASGALTLYRRYLENQTPLPLILQPPEGISQMNIDSAGNFVCG EEEEEEEECCCCCCEEECCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCEEEC EGSGMRVIPVWTENPQALCQGSAPTQDPTKPNDDGVADWIKEMFGQ CCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure SGDDREPIGRKGKKAQPKAAPKRPLRRRRDEDEYEEDYDEEQNDDDYDDEEEPMPRKVA CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH SRPPRKKRRWLGLLIKLFLIGAVALAIYGVYLDSQIRSRIDGKVWQLPAAVYGRMVNLEP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECHHHHCEEEECCC GMSYSKKEMIALLEGMQYRQVSRMTRPGEFTVQNDSIDILRRPFDFPDGKEGQIRARLLF CCCCHHHHHHHHHHCHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCCCCCCCEEEEEEE KNDRLAQIQNLDNQRDFGLFRLDPKLITMLQSPNGEQRLFVPRAGFPDLLVDTLLATEDR CCCCHHHHHCCCCCCCCCEEEECHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCC HFYEHDGVSPYSIARAVVANLTAGKAVQGGSTLTQQLVKNLFLTNERSLVRKLNEAYMAL CHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LMDYRYSKDRILELYLNEVYLGQSGGDQIRGFPLGSLYYFGRPVDELSLDQQAMLVGMVK HHHHCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHCCCCCHHHHCCCHHHHHHHHHC GASLYNPWRNPKLALERRNLVLRLLQNQGIIDAELYTMLSARPLGVQPKGGVITPQPAFM CCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHH QMVRQELQQKLGNKVNDLSGVKIFTTLDPVSQDAAEKAIEDGVPALRAARNMNDLEAAMV HHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHH VVDRFSGEVRAMVGGSQPQFAGFNRAMQARRLVGSLAKPPTYLAALSEPDKYRLNTWLSD HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCC QPLSLKLSNGSLWQPKNYDRQFRGQVMLMDALVNSLNIPTVNLGMSVGLDQISATLQRLG CCCEEEECCCCCCCCCCCCHHHCCCEEEHHHHHHHCCCCEEECCHHCCHHHHHHHHHHHC IPKSVINPVPAMLLGAIDLTPVEVAQEYQTIASGGNRAPLSAVRSVIAEDGTVLYQSFPQ CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCH AERMVPAQASYLTLYAMQQGVVRGTSRSLSAKFGKYNLAAKTGTTNDLRDSWFAGIDGKE HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCE VTIAWIGRDNNGPTKLTGASGALTLYRRYLENQTPLPLILQPPEGISQMNIDSAGNFVCG EEEEEEEECCCCCCEEECCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCEEEC EGSGMRVIPVWTENPQALCQGSAPTQDPTKPNDDGVADWIKEMFGQ CCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3882429; 8202364; 9278503; 3920658; 8645198; 9244263; 3330753; 1885547; 10037771; 10564478; 9841666 [H]