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The map label for this gene is yvoA [H]

Identifier: 50841938

GI number: 50841938

Start: 501099

End: 501842

Strand: Reverse

Name: yvoA [H]

Synonym: PPA0455

Alternate gene names: 50841938

Gene position: 501842-501099 (Counterclockwise)

Preceding gene: 50841943

Following gene: 50841937

Centisome position: 19.6

GC content: 62.63

Gene sequence:

>744_bases
GTGGAGAACGAGCCCTACATCGCTGACATCACCATCGACCGATCGCGCCCAGAACCACTCCACACCCAGATCGCCGAACC
CCTGGCGCAACTCATCGAATCCGGCGAGCTTCCTCCCGGAACGCGCATCGAAGACGAAATGTCCATGGCGGCACGCCTGC
ATGTATCGCGTCCCACCGCGCGGCGAGCTTTTGAAACCCTGACCCAACGTGGACTCGTCATCCGCCGACGCGGCATCGGC
ACCCAGGTGACCCCCACCCGAGTGCACCGCTCCATGAACCTCACGAGTCTTTATGACGACCTCCAGGCATCTGGCCAAAG
GCCGCGCACCAGCGTGCTCGACTGGACAGTGGAAACCGCCCCGCCAGCAGTAGCCGCAGCGCTTGGCCTGCCCAGCAACT
CCGAAGTGGCCCATTTCCGCCGACTACGAATGTCCCAGGACGAACCGCTGGCCATCATGACGAACTGGGTACCCGTGGAC
CTCGCGCCCAGTGCAGAAGAGCTGAGAACCACTGGTTTCTACGACTATCTGCGCAGCAGGGATGTCGTCGTCGCGGTAGG
CCATCAGCGATTCAGCGCCCGTCTCGCCCTCCCTGACGAGGCACGTCTGCTCAACGAACCACCCGGCGCCGCCCTACTCA
CGATGCAACGCACGGCATGTGACGAGTCCAACCGCGTCATCGAGTTTGGACAGCACGTGTACCGCGCCTCCATTTATGCC
TATGAGAACACGGTGTACGCCTGA

Upstream 100 bases:

>100_bases
GCCCGCTTATATCCTGACGCAGCCCGTACGATCGGTCCGCCCCTTGCACTGCCCACCAATAGACTGTGCGTCAGTACATA
CCCACAAATGAGGAACGACA

Downstream 100 bases:

>100_bases
CGCCGCGGCGAGATTATTTGACAGGACAAATTTTGCGGTGTTGGCTAGATCTTGTACCGGCGGCGACGACGAGCCGGTGA
ACACCTCGCACAGGAGTTGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MENEPYIADITIDRSRPEPLHTQIAEPLAQLIESGELPPGTRIEDEMSMAARLHVSRPTARRAFETLTQRGLVIRRRGIG
TQVTPTRVHRSMNLTSLYDDLQASGQRPRTSVLDWTVETAPPAVAAALGLPSNSEVAHFRRLRMSQDEPLAIMTNWVPVD
LAPSAEELRTTGFYDYLRSRDVVVAVGHQRFSARLALPDEARLLNEPPGAALLTMQRTACDESNRVIEFGQHVYRASIYA
YENTVYA

Sequences:

>Translated_247_residues
MENEPYIADITIDRSRPEPLHTQIAEPLAQLIESGELPPGTRIEDEMSMAARLHVSRPTARRAFETLTQRGLVIRRRGIG
TQVTPTRVHRSMNLTSLYDDLQASGQRPRTSVLDWTVETAPPAVAAALGLPSNSEVAHFRRLRMSQDEPLAIMTNWVPVD
LAPSAEELRTTGFYDYLRSRDVVVAVGHQRFSARLALPDEARLLNEPPGAALLTMQRTACDESNRVIEFGQHVYRASIYA
YENTVYA
>Mature_247_residues
MENEPYIADITIDRSRPEPLHTQIAEPLAQLIESGELPPGTRIEDEMSMAARLHVSRPTARRAFETLTQRGLVIRRRGIG
TQVTPTRVHRSMNLTSLYDDLQASGQRPRTSVLDWTVETAPPAVAAALGLPSNSEVAHFRRLRMSQDEPLAIMTNWVPVD
LAPSAEELRTTGFYDYLRSRDVVVAVGHQRFSARLALPDEARLLNEPPGAALLTMQRTACDESNRVIEFGQHVYRASIYA
YENTVYA

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=223, Percent_Identity=26.457399103139, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI87082252, Length=229, Percent_Identity=26.6375545851528, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1790118, Length=226, Percent_Identity=26.9911504424779, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786950, Length=227, Percent_Identity=24.2290748898678, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790540, Length=205, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27663; Mature: 27663

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENEPYIADITIDRSRPEPLHTQIAEPLAQLIESGELPPGTRIEDEMSMAARLHVSRPTA
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHH
RRAFETLTQRGLVIRRRGIGTQVTPTRVHRSMNLTSLYDDLQASGQRPRTSVLDWTVETA
HHHHHHHHHCCEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCC
PPAVAAALGLPSNSEVAHFRRLRMSQDEPLAIMTNWVPVDLAPSAEELRTTGFYDYLRSR
CCHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHCC
DVVVAVGHQRFSARLALPDEARLLNEPPGAALLTMQRTACDESNRVIEFGQHVYRASIYA
CEEEEECCCCEEEEECCCHHHHHHCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHEEE
YENTVYA
ECCEECC
>Mature Secondary Structure
MENEPYIADITIDRSRPEPLHTQIAEPLAQLIESGELPPGTRIEDEMSMAARLHVSRPTA
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHH
RRAFETLTQRGLVIRRRGIGTQVTPTRVHRSMNLTSLYDDLQASGQRPRTSVLDWTVETA
HHHHHHHHHCCEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCC
PPAVAAALGLPSNSEVAHFRRLRMSQDEPLAIMTNWVPVDLAPSAEELRTTGFYDYLRSR
CCHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHCC
DVVVAVGHQRFSARLALPDEARLLNEPPGAALLTMQRTACDESNRVIEFGQHVYRASIYA
CEEEEECCCCEEEEECCCHHHHHHCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHEEE
YENTVYA
ECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]