| Definition | Propionibacterium acnes KPA171202, complete genome. |
|---|---|
| Accession | NC_006085 |
| Length | 2,560,265 |
Click here to switch to the map view.
The map label for this gene is cobB [H]
Identifier: 50841921
GI number: 50841921
Start: 481231
End: 483654
Strand: Direct
Name: cobB [H]
Synonym: PPA0438
Alternate gene names: 50841921
Gene position: 481231-483654 (Clockwise)
Preceding gene: 50841920
Following gene: 50841922
Centisome position: 18.8
GC content: 63.86
Gene sequence:
>2424_bases ATGCGCCTTCCACGAATTCTTATTGCCGCCCCGGCATCGGGTGGTGGCAAAACAACTGTTGCTACCGGTCTCATGGCAGC TCTTCGCGCCAGTGGCCGGACGGTGGCGCCTTTCAAGGTCGGACCGGACTACATCGACCCCGGATACCACTCGATGGCGA GTGGACGTCCCGGTCGCAACCTCGACTCCGTGATGTGCGGTGACGAGCTCATGGCCCCTCTGCTAGCCCACGGTTTCGTC ACCCCTGATCCGGCCGATATTGCGGTTATTGAGGGGGTTATGGGGCTGTTCGACGGCCAGCTTGGGACTGGTCGTGGCTC CAGCGCCGAGATCGCCACGACGACCCGAACTCCGGTTGTCGTGGTCGTTGACACCGCGCATGCTTCGCTCACCCATGCCG CCGTCGTGGCCGGTTTGGCGACGTTCGATCCTGACGTCACCGTTGCGGGGACGATTCTTAACCGGGTGGCCTCACCCCGT CACGGTGCCGAAGTCGCTCGGGGCTTAGCCCGACTGGGCATCCCGGTGCTCGGTCAGATTCCGCGTACCGAGTCGATCTT TGTGCCGTCGCGCCACCTCGGTCTGGTGCCAGCGGGGGAATGGCAAGACTCCGCGACCAAGGTTGCCGGGCTGGGGGACC TCATTGCCGAATACGTCGATCTTGACGCTGTCATGGATTTGGCTGCCACTGCCCCCGACCTCGATGTCGAGCCGTGGGAT CCCGCCGCTACCCTGGAATCCGCCGGCTGGCAAGGCCATCCATTCGGTGAGTCGCCGGTTGTGGGTATGTTCGCCGGACG GGCCTTCACCTTCCGGTACCCCGAGACCACCGAGATGCTGATAGCGGCAGGGTTCCGGGTCGTCGACGTTGATCCCCTTA CGGATCGGCGCCTTCCTGACGGCATCCAAGGACTGTATTTGGGAGGCGGCTTTCCTCAGATGCATGCCACCGATTTGGAA ACCAACTCGGAGCTGGCGGACGACGTACGGTCCCACGCTGAGGCCGGGATGCCGATCGTCGCTGAGTGCGCCGGGTTGTT GTATCTGTGCCGTCACCTTGACGGGCACGAGATGGCTGGCGTGCTACCGATGGATGCGGCCATGGCAAAGCGGCTCACGA TGGGGTACCGCGTCGCTACACGTGACTCCATCAGTGTCGTTGGTCACGAATTTCACCGCACTACGACGACTCCGCTGGCC GACCTCGACCCGGCGTGGCACATCACGATGCCCGACGGCACCGACCGCGCCGAGGGGGCTTTGGGAGATCCGGCGGGGCT GGGCCGACCCACGATTCAGGCGTCCTACCTGCACCTGCACTGGGCCGGCCAGCCCACCCAAGCAGCGTGGTTTGCCAGCG AGGTGACAAAGTTCCACGAGGGCCGAGGTGATCAAGTCGTTGAGCCCGATCTCAACCATCACGGGGATCGTGACATCGCC GACGGTTTGGTCGACCTGGCCGTCAACGTGCGCGTGAGTGAGCCGCCGCAGTGGCTTCGCGACGCCATCATCTCCACCGA GCATGACTGGGCCCGTTACCCCGATGCCACGCCGGGTCGCGAGGCCCTGGCGGCCATGCACGGGGTGCCTACCGACATGG TGCTGCCCACCGCAGGTGCTGCAGAGGCTTTCCCGCTGGTCGCCACCCTCGAACCTCGTCACGCAATCGTCGTCCACCCC CAGTTCACCGAGCCCGAAGCTGCTCTGAGAGCGGCCGGGATTAGCGTCGGTCGGCACATCCTTAACGTGTCCGATGGGTT CGCCCTCGACCCGGACCTCGTCCCCGACGATGCCGACCTCGTCGTCGTCGGGAACCCGACGAATCCCACTGGCAGACTGC ACCCGGCTACCGACCTGCTGGCTCTGCGCCGCCCCGGAAGGATCCTCGTCGTGGACGAGGCCTTCATGGACGCCACCGAT GAGTCCCAGTCCCTTATTGGAAGCGATATGGACGACCTCCTCGTCCTGCGCTCCATGACAAAAACCTACGGTCTGGCTGG AATCCGGGCCGGATATGTCGTCGGTGATTCACAGCTCGTCGCACAGTTGGCAGCTCACCAGACCCCATGGTCGGTGTCGA CTCCAGCAATTGCAGCCATGATCGCGTGCACCTGCGAAGAGGCTAGACGTTTTCGGACCCAGTTACGCGACGACATCCCA GCCGCCCGCGCCAACCTCGTCGACAAGCTTAAAGGCCTCGGGCTGAGCGTCGTTGACTCCGAGGCTCCCTTTGTTTTGGT CAACACATCGTCTCTCAGCGGGGATTCGATACGCCAGCCCCTTGCCGAGCGTGGTTTCGCTGTGAGGCGGGGGGAGACGT TCCCCGGGCTCGGGCCTACCTGGATCAGACTCGCAGTCCGTGACTCGAATATTCATGCCGAGCTCGCTCGAGCTATCTCC GATCTGACAGCACACCGCAACTAA
Upstream 100 bases:
>100_bases CGGATGCGCTTGTCGAGGTGGCCGATATCGTCACCGAGATGACGAAGATCAAACACCCGTTTGACGTTGGCCAGCGCGGC CAGGCGGGAATCGAGTGGTG
Downstream 100 bases:
>100_bases GGAATATCAATGATCTACTCCGCAGACCTCGTTCCCGGCACCGTCACTCTCGTCGGAGGTGGCCCTGGTGATCCCGGATT GCTGACCGTCGCGGGATTTG
Product: cobyrinic acid a,c-diamide synthase
Products: 2-Oxoglutarate; L-Histidinol phosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 807; Mature: 807
Protein sequence:
>807_residues MRLPRILIAAPASGGGKTTVATGLMAALRASGRTVAPFKVGPDYIDPGYHSMASGRPGRNLDSVMCGDELMAPLLAHGFV TPDPADIAVIEGVMGLFDGQLGTGRGSSAEIATTTRTPVVVVVDTAHASLTHAAVVAGLATFDPDVTVAGTILNRVASPR HGAEVARGLARLGIPVLGQIPRTESIFVPSRHLGLVPAGEWQDSATKVAGLGDLIAEYVDLDAVMDLAATAPDLDVEPWD PAATLESAGWQGHPFGESPVVGMFAGRAFTFRYPETTEMLIAAGFRVVDVDPLTDRRLPDGIQGLYLGGGFPQMHATDLE TNSELADDVRSHAEAGMPIVAECAGLLYLCRHLDGHEMAGVLPMDAAMAKRLTMGYRVATRDSISVVGHEFHRTTTTPLA DLDPAWHITMPDGTDRAEGALGDPAGLGRPTIQASYLHLHWAGQPTQAAWFASEVTKFHEGRGDQVVEPDLNHHGDRDIA DGLVDLAVNVRVSEPPQWLRDAIISTEHDWARYPDATPGREALAAMHGVPTDMVLPTAGAAEAFPLVATLEPRHAIVVHP QFTEPEAALRAAGISVGRHILNVSDGFALDPDLVPDDADLVVVGNPTNPTGRLHPATDLLALRRPGRILVVDEAFMDATD ESQSLIGSDMDDLLVLRSMTKTYGLAGIRAGYVVGDSQLVAQLAAHQTPWSVSTPAIAAMIACTCEEARRFRTQLRDDIP AARANLVDKLKGLGLSVVDSEAPFVLVNTSSLSGDSIRQPLAERGFAVRRGETFPGLGPTWIRLAVRDSNIHAELARAIS DLTAHRN
Sequences:
>Translated_807_residues MRLPRILIAAPASGGGKTTVATGLMAALRASGRTVAPFKVGPDYIDPGYHSMASGRPGRNLDSVMCGDELMAPLLAHGFV TPDPADIAVIEGVMGLFDGQLGTGRGSSAEIATTTRTPVVVVVDTAHASLTHAAVVAGLATFDPDVTVAGTILNRVASPR HGAEVARGLARLGIPVLGQIPRTESIFVPSRHLGLVPAGEWQDSATKVAGLGDLIAEYVDLDAVMDLAATAPDLDVEPWD PAATLESAGWQGHPFGESPVVGMFAGRAFTFRYPETTEMLIAAGFRVVDVDPLTDRRLPDGIQGLYLGGGFPQMHATDLE TNSELADDVRSHAEAGMPIVAECAGLLYLCRHLDGHEMAGVLPMDAAMAKRLTMGYRVATRDSISVVGHEFHRTTTTPLA DLDPAWHITMPDGTDRAEGALGDPAGLGRPTIQASYLHLHWAGQPTQAAWFASEVTKFHEGRGDQVVEPDLNHHGDRDIA DGLVDLAVNVRVSEPPQWLRDAIISTEHDWARYPDATPGREALAAMHGVPTDMVLPTAGAAEAFPLVATLEPRHAIVVHP QFTEPEAALRAAGISVGRHILNVSDGFALDPDLVPDDADLVVVGNPTNPTGRLHPATDLLALRRPGRILVVDEAFMDATD ESQSLIGSDMDDLLVLRSMTKTYGLAGIRAGYVVGDSQLVAQLAAHQTPWSVSTPAIAAMIACTCEEARRFRTQLRDDIP AARANLVDKLKGLGLSVVDSEAPFVLVNTSSLSGDSIRQPLAERGFAVRRGETFPGLGPTWIRLAVRDSNIHAELARAIS DLTAHRN >Mature_807_residues MRLPRILIAAPASGGGKTTVATGLMAALRASGRTVAPFKVGPDYIDPGYHSMASGRPGRNLDSVMCGDELMAPLLAHGFV TPDPADIAVIEGVMGLFDGQLGTGRGSSAEIATTTRTPVVVVVDTAHASLTHAAVVAGLATFDPDVTVAGTILNRVASPR HGAEVARGLARLGIPVLGQIPRTESIFVPSRHLGLVPAGEWQDSATKVAGLGDLIAEYVDLDAVMDLAATAPDLDVEPWD PAATLESAGWQGHPFGESPVVGMFAGRAFTFRYPETTEMLIAAGFRVVDVDPLTDRRLPDGIQGLYLGGGFPQMHATDLE TNSELADDVRSHAEAGMPIVAECAGLLYLCRHLDGHEMAGVLPMDAAMAKRLTMGYRVATRDSISVVGHEFHRTTTTPLA DLDPAWHITMPDGTDRAEGALGDPAGLGRPTIQASYLHLHWAGQPTQAAWFASEVTKFHEGRGDQVVEPDLNHHGDRDIA DGLVDLAVNVRVSEPPQWLRDAIISTEHDWARYPDATPGREALAAMHGVPTDMVLPTAGAAEAFPLVATLEPRHAIVVHP QFTEPEAALRAAGISVGRHILNVSDGFALDPDLVPDDADLVVVGNPTNPTGRLHPATDLLALRRPGRILVVDEAFMDATD ESQSLIGSDMDDLLVLRSMTKTYGLAGIRAGYVVGDSQLVAQLAAHQTPWSVSTPAIAAMIACTCEEARRFRTQLRDDIP AARANLVDKLKGLGLSVVDSEAPFVLVNTSSLSGDSIRQPLAERGFAVRRGETFPGLGPTWIRLAVRDSNIHAELARAIS DLTAHRN
Specific function: Responsible for the amidation of carboxylic groups at position A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation [H]
COG id: COG1797
COG function: function code H; Cobyrinic acid a,c-diamide synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GATase cobBQ-type domain [H]
Homologues:
Organism=Escherichia coli, GI1788332, Length=289, Percent_Identity=29.0657439446367, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002586 - InterPro: IPR004484 - InterPro: IPR017929 - InterPro: IPR011698 [H]
Pfam domain/function: PF01656 CbiA; PF07685 GATase_3 [H]
EC number: 2.6.1.9 [C]
Molecular weight: Translated: 85596; Mature: 85596
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00059 ADH_ZINC ; PS00105 AA_TRANSFER_CLASS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPRILIAAPASGGGKTTVATGLMAALRASGRTVAPFKVGPDYIDPGYHSMASGRPGRN CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCEECCCCCCCCCCHHHHCCCCCCC LDSVMCGDELMAPLLAHGFVTPDPADIAVIEGVMGLFDGQLGTGRGSSAEIATTTRTPVV CHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEE VVVDTAHASLTHAAVVAGLATFDPDVTVAGTILNRVASPRHGAEVARGLARLGIPVLGQI EEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCC PRTESIFVPSRHLGLVPAGEWQDSATKVAGLGDLIAEYVDLDAVMDLAATAPDLDVEPWD CCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PAATLESAGWQGHPFGESPVVGMFAGRAFTFRYPETTEMLIAAGFRVVDVDPLTDRRLPD CHHHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHCCCEEEECCCCCCCCCCC GIQGLYLGGGFPQMHATDLETNSELADDVRSHAEAGMPIVAECAGLLYLCRHLDGHEMAG CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC VLPMDAAMAKRLTMGYRVATRDSISVVGHEFHRTTTTPLADLDPAWHITMPDGTDRAEGA CCCHHHHHHHHHHHCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCC LGDPAGLGRPTIQASYLHLHWAGQPTQAAWFASEVTKFHEGRGDQVVEPDLNHHGDRDIA CCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHH DGLVDLAVNVRVSEPPQWLRDAIISTEHDWARYPDATPGREALAAMHGVPTDMVLPTAGA HHHEEEEEEEEECCCHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHCCCCCCEECCCCC AEAFPLVATLEPRHAIVVHPQFTEPEAALRAAGISVGRHILNVSDGFALDPDLVPDDADL CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCCCE VVVGNPTNPTGRLHPATDLLALRRPGRILVVDEAFMDATDESQSLIGSDMDDLLVLRSMT EEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHCCCHHHHHHHHHHH KTYGLAGIRAGYVVGDSQLVAQLAAHQTPWSVSTPAIAAMIACTCEEARRFRTQLRDDIP HHHCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC AARANLVDKLKGLGLSVVDSEAPFVLVNTSSLSGDSIRQPLAERGFAVRRGETFPGLGPT HHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCE WIRLAVRDSNIHAELARAISDLTAHRN EEEEEEECCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRLPRILIAAPASGGGKTTVATGLMAALRASGRTVAPFKVGPDYIDPGYHSMASGRPGRN CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCEECCCCCCCCCCHHHHCCCCCCC LDSVMCGDELMAPLLAHGFVTPDPADIAVIEGVMGLFDGQLGTGRGSSAEIATTTRTPVV CHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEE VVVDTAHASLTHAAVVAGLATFDPDVTVAGTILNRVASPRHGAEVARGLARLGIPVLGQI EEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCC PRTESIFVPSRHLGLVPAGEWQDSATKVAGLGDLIAEYVDLDAVMDLAATAPDLDVEPWD CCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PAATLESAGWQGHPFGESPVVGMFAGRAFTFRYPETTEMLIAAGFRVVDVDPLTDRRLPD CHHHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHCCCEEEECCCCCCCCCCC GIQGLYLGGGFPQMHATDLETNSELADDVRSHAEAGMPIVAECAGLLYLCRHLDGHEMAG CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC VLPMDAAMAKRLTMGYRVATRDSISVVGHEFHRTTTTPLADLDPAWHITMPDGTDRAEGA CCCHHHHHHHHHHHCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCC LGDPAGLGRPTIQASYLHLHWAGQPTQAAWFASEVTKFHEGRGDQVVEPDLNHHGDRDIA CCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHH DGLVDLAVNVRVSEPPQWLRDAIISTEHDWARYPDATPGREALAAMHGVPTDMVLPTAGA HHHEEEEEEEEECCCHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHCCCCCCEECCCCC AEAFPLVATLEPRHAIVVHPQFTEPEAALRAAGISVGRHILNVSDGFALDPDLVPDDADL CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCCCE VVVGNPTNPTGRLHPATDLLALRRPGRILVVDEAFMDATDESQSLIGSDMDDLLVLRSMT EEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHCCCHHHHHHHHHHH KTYGLAGIRAGYVVGDSQLVAQLAAHQTPWSVSTPAIAAMIACTCEEARRFRTQLRDDIP HHHCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC AARANLVDKLKGLGLSVVDSEAPFVLVNTSSLSGDSIRQPLAERGFAVRRGETFPGLGPT HHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCE WIRLAVRDSNIHAELARAISDLTAHRN EEEEEEECCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Pyridoxal Phosphate. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-Glutamate; 3-(Imidazol-4-yl)-2-oxopropyl phosphate [C]
Specific reaction: L-Glutamate + 3-(Imidazol-4-yl)-2-oxopropyl phosphate --> 2-Oxoglutarate + L-Histidinol phosphate [C]
General reaction: Amino group transfer [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA