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The map label for this gene is opuCD [H]

Identifier: 50841888

GI number: 50841888

Start: 451944

End: 452591

Strand: Reverse

Name: opuCD [H]

Synonym: PPA0406

Alternate gene names: 50841888

Gene position: 452591-451944 (Counterclockwise)

Preceding gene: 50841889

Following gene: 50841887

Centisome position: 17.68

GC content: 62.04

Gene sequence:

>648_bases
GTGAACACCCGATGGATTAGCGAGAACTGGGATCAGATTTGGCAGCTCACAAGCCACCACGCGGTGCTAGGCGTCACTCC
CGTGCTACTGAGCCTATTACTGTCGGTCCCGTTGGGATGGTGGGCGCACCGCGCGCGAACCGCCAGGCGCATTCTTGTGC
CGGGCGCGTCAGTCCTCTACGCCCTCCCTTCTCTGCCACTGTTCGTCCTTTTGCCGCTCATCCTCGGAACGAAGATCCTT
GATCCGATCAACGTCGTCGTCGCGCTGACCCTGTACGGCATTGCCGTGCTGGTGCGCACCGCCACTGATGCCTTCGATTC
GGTGGGACGATCGGTACGCCGTGATGCCGTCGCCATAGGCCACTCGGATTCCCAGGTGTTCTGGCGGGTCGCCTTGCCGC
TCGCCGTTCCCGCGCTCGTTGCCGGAATGCGGGTGGTCTCGGCGTCCACCCTGTCCTTAGTCAGCGTTGGAGCCCTAGTC
GGTGTGCCCTCTTTGGGTTACTTCTTCACCGATGGCTACCAGCGCTCCTTCCCCACCGAGATCTGGGTAGGAATTATCGG
GACCCTGGTACTGGCGATCATCTTCGATCTCGTCATCGTCTGCGTCGGTCGCCTCCTGACTCCGTGGCGGAGGGCAGCGA
CGATATGA

Upstream 100 bases:

>100_bases
ACATGGAGCGACATGATGACCACCCCACCATCGTTGATGCCGGTGGTCGACTCGTGGGGCGTTTCGCCAACCAGCCATCG
ACAACCGTCCGGGAGAATTC

Downstream 100 bases:

>100_bases
ACCACATCGCAGCAGCTCTCACTTGGTTGACGACTTCCTCCCACTGGGCCGGTTCCGGATCTATCGGGGTCCGCATCGGC
GAGCACCTTTGGTACACCTT

Product: ABC transporter-associated permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNTRWISENWDQIWQLTSHHAVLGVTPVLLSLLLSVPLGWWAHRARTARRILVPGASVLYALPSLPLFVLLPLILGTKIL
DPINVVVALTLYGIAVLVRTATDAFDSVGRSVRRDAVAIGHSDSQVFWRVALPLAVPALVAGMRVVSASTLSLVSVGALV
GVPSLGYFFTDGYQRSFPTEIWVGIIGTLVLAIIFDLVIVCVGRLLTPWRRAATI

Sequences:

>Translated_215_residues
MNTRWISENWDQIWQLTSHHAVLGVTPVLLSLLLSVPLGWWAHRARTARRILVPGASVLYALPSLPLFVLLPLILGTKIL
DPINVVVALTLYGIAVLVRTATDAFDSVGRSVRRDAVAIGHSDSQVFWRVALPLAVPALVAGMRVVSASTLSLVSVGALV
GVPSLGYFFTDGYQRSFPTEIWVGIIGTLVLAIIFDLVIVCVGRLLTPWRRAATI
>Mature_215_residues
MNTRWISENWDQIWQLTSHHAVLGVTPVLLSLLLSVPLGWWAHRARTARRILVPGASVLYALPSLPLFVLLPLILGTKIL
DPINVVVALTLYGIAVLVRTATDAFDSVGRSVRRDAVAIGHSDSQVFWRVALPLAVPALVAGMRVVSASTLSLVSVGALV
GVPSLGYFFTDGYQRSFPTEIWVGIIGTLVLAIIFDLVIVCVGRLLTPWRRAATI

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=199, Percent_Identity=30.6532663316583, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789033, Length=176, Percent_Identity=28.9772727272727, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23338; Mature: 23338

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRWISENWDQIWQLTSHHAVLGVTPVLLSLLLSVPLGWWAHRARTARRILVPGASVLY
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
ALPSLPLFVLLPLILGTKILDPINVVVALTLYGIAVLVRTATDAFDSVGRSVRRDAVAIG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HSDSQVFWRVALPLAVPALVAGMRVVSASTLSLVSVGALVGVPSLGYFFTDGYQRSFPTE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHH
IWVGIIGTLVLAIIFDLVIVCVGRLLTPWRRAATI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTRWISENWDQIWQLTSHHAVLGVTPVLLSLLLSVPLGWWAHRARTARRILVPGASVLY
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
ALPSLPLFVLLPLILGTKILDPINVVVALTLYGIAVLVRTATDAFDSVGRSVRRDAVAIG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HSDSQVFWRVALPLAVPALVAGMRVVSASTLSLVSVGALVGVPSLGYFFTDGYQRSFPTE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHH
IWVGIIGTLVLAIIFDLVIVCVGRLLTPWRRAATI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]