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The map label for this gene is fadM [H]

Identifier: 50841803

GI number: 50841803

Start: 368075

End: 368971

Strand: Direct

Name: fadM [H]

Synonym: PPA0316

Alternate gene names: 50841803

Gene position: 368075-368971 (Clockwise)

Preceding gene: 50841802

Following gene: 50841804

Centisome position: 14.38

GC content: 58.97

Gene sequence:

>897_bases
ATGCGATTGGCGATGGACCCCACGATCGCTCACAAGGTGTCCCGATCTCGAATCGCTCGTGAGATTGCTGTGACGTACGT
TGCGGGGGAAGACGTCGCATCGGCGGTCGATAAGGCTGCTGATCAGGTGTCTAAGGGCCTAGACGTCAGCCTGCACCCCC
TTGATCCCGATCCCGCTGACCTAGCCCAGGCCCGACGAGCAATGGTCAGGCTGTGCGGGGTTATCGAGAGACTCGGCGCT
GATCCGTCCTTTAATGGTCATGCTGAAGTGTCGATTAGCTTGGCGGCTCTGGGGCTGAAAGTCAGCGACGATCTGGCCCG
GGACCACGCCCGACAGGTCTGCCAGGTTGCTCGCGACAACCACGTTGCTGTGACCGTTGACGACGAAGGCCCCGACATCC
ATGACCGCTCGCATCGCATTGTGATGGATCTGCTGAGCGAATACGAAAACACCGGCATCGTCATCCAGGCTGCACGCCAC
GATTCCCTCATGCAGGTTCGAGAACTGGCTGCTCCGGGACGCCGCATCAGGCTGTGCAAAGGCTCGTACACCGGCCCTCG
TTCCGTTACTTTGATCCGTCCACACGACGTCGATCTGAGAATGGCGGCTTGTCTGCGCGCTCTCATGACCGGTCCTTCGA
CGGTGATGTTAGCCAGCCATGATCCCGTCTTTGTGGCGCTCGGTGAGCAACTTATGGCAAGTCTGGATCGTCAGCTGGAG
TTCCAAATGCTGCAAGGAATCCGTCCCTTAGAGCAGCGGAGACTGGTGGACATTGGCCATCGGATGAGGGTTTATCTGCC
CTATGGCCATGACTGGTACCGGTACTGCACTCGACGAATCGTCGAGAGGCCGGGCAATATTTGGCTGTTTGGGCGATCGC
TGGTGGAGAGGCGTTGA

Upstream 100 bases:

>100_bases
CTCGCCGATCTGGCCAGGCGTGGGAAGGGGCCCGGTAGTGACGGAGAGTCGACATGATTTCCGGGGCAGAGCTCTGCTGG
CATCGGGTCGACGTCTTGCG

Downstream 100 bases:

>100_bases
TGATGCGGAATAACACGAGCACCCTCGGCCCTCGCCGGTGCCTGGATGAGAGGCCTCGTCGGGGGATGATGAGGGATCGC
GCGGCGGATCGGCGCCTGCT

Product: putative proline dehydrogenase

Products: NA

Alternate protein names: PRODH 1; Proline oxidase 1 [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MRLAMDPTIAHKVSRSRIAREIAVTYVAGEDVASAVDKAADQVSKGLDVSLHPLDPDPADLAQARRAMVRLCGVIERLGA
DPSFNGHAEVSISLAALGLKVSDDLARDHARQVCQVARDNHVAVTVDDEGPDIHDRSHRIVMDLLSEYENTGIVIQAARH
DSLMQVRELAAPGRRIRLCKGSYTGPRSVTLIRPHDVDLRMAACLRALMTGPSTVMLASHDPVFVALGEQLMASLDRQLE
FQMLQGIRPLEQRRLVDIGHRMRVYLPYGHDWYRYCTRRIVERPGNIWLFGRSLVERR

Sequences:

>Translated_298_residues
MRLAMDPTIAHKVSRSRIAREIAVTYVAGEDVASAVDKAADQVSKGLDVSLHPLDPDPADLAQARRAMVRLCGVIERLGA
DPSFNGHAEVSISLAALGLKVSDDLARDHARQVCQVARDNHVAVTVDDEGPDIHDRSHRIVMDLLSEYENTGIVIQAARH
DSLMQVRELAAPGRRIRLCKGSYTGPRSVTLIRPHDVDLRMAACLRALMTGPSTVMLASHDPVFVALGEQLMASLDRQLE
FQMLQGIRPLEQRRLVDIGHRMRVYLPYGHDWYRYCTRRIVERPGNIWLFGRSLVERR
>Mature_298_residues
MRLAMDPTIAHKVSRSRIAREIAVTYVAGEDVASAVDKAADQVSKGLDVSLHPLDPDPADLAQARRAMVRLCGVIERLGA
DPSFNGHAEVSISLAALGLKVSDDLARDHARQVCQVARDNHVAVTVDDEGPDIHDRSHRIVMDLLSEYENTGIVIQAARH
DSLMQVRELAAPGRRIRLCKGSYTGPRSVTLIRPHDVDLRMAACLRALMTGPSTVMLASHDPVFVALGEQLMASLDRQLE
FQMLQGIRPLEQRRLVDIGHRMRVYLPYGHDWYRYCTRRIVERPGNIWLFGRSLVERR

Specific function: Catalyzes the oxidation of L-proline to delta-1- pyrroline-5-carboxylate (P5C) [H]

COG id: COG0506

COG function: function code E; Proline dehydrogenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline oxidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015590
- InterPro:   IPR002872
- InterPro:   IPR008219 [H]

Pfam domain/function: PF01619 Pro_dh [H]

EC number: =1.5.99.8 [H]

Molecular weight: Translated: 33304; Mature: 33304

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLAMDPTIAHKVSRSRIAREIAVTYVAGEDVASAVDKAADQVSKGLDVSLHPLDPDPAD
CCCCCCCHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
LAQARRAMVRLCGVIERLGADPSFNGHAEVSISLAALGLKVSDDLARDHARQVCQVARDN
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECEECCHHHHHHHHHHHHHHHCCC
HVAVTVDDEGPDIHDRSHRIVMDLLSEYENTGIVIQAARHDSLMQVRELAAPGRRIRLCK
EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEC
GSYTGPRSVTLIRPHDVDLRMAACLRALMTGPSTVMLASHDPVFVALGEQLMASLDRQLE
CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEHHHHHHHHHHHHHH
FQMLQGIRPLEQRRLVDIGHRMRVYLPYGHDWYRYCTRRIVERPGNIWLFGRSLVERR
HHHHHCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCC
>Mature Secondary Structure
MRLAMDPTIAHKVSRSRIAREIAVTYVAGEDVASAVDKAADQVSKGLDVSLHPLDPDPAD
CCCCCCCHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
LAQARRAMVRLCGVIERLGADPSFNGHAEVSISLAALGLKVSDDLARDHARQVCQVARDN
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECEECCHHHHHHHHHHHHHHHCCC
HVAVTVDDEGPDIHDRSHRIVMDLLSEYENTGIVIQAARHDSLMQVRELAAPGRRIRLCK
EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEC
GSYTGPRSVTLIRPHDVDLRMAACLRALMTGPSTVMLASHDPVFVALGEQLMASLDRQLE
CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEHHHHHHHHHHHHHH
FQMLQGIRPLEQRRLVDIGHRMRVYLPYGHDWYRYCTRRIVERPGNIWLFGRSLVERR
HHHHHCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA