BacMap

Definition	Mesoplasma florum L1, complete genome.
Accession	NC_006055
Length	793,224

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The map label for this gene is rbsA [H]

Identifier: 50365267

GI number: 50365267

Start: 532382

End: 533089

Strand: Reverse

Name: rbsA [H]

Synonym: Mfl450

Alternate gene names: 50365267

Gene position: 533089-532382 (Counterclockwise)

Preceding gene: 50365268

Following gene: 50365266

Centisome position: 67.21

GC content: 23.02

Gene sequence:

>708_bases
ATGATTGAATTTAAAAACGTAGATAAAATGTTTGCATCTAATAAAGGATTAAAAGGTGTAAATATTATTATTGATAAAGA
ACAAATAGGTTTAGTTGGTCCTAATGGAGCTGGTAAAACAACTTTTATTGAACTATTATTAGGTTTTCACTTACCAAGAA
AAGGTGAAATTCTTATTAATGGTATTAAGTCAACAGATAAGAATTTTGATATTAGTAAAATTGGCTATATATCAGCTAAT
TTAGATATTCCTAAAAAATTAAGTGTATCTGAGTATGTAGGATATATTAAAGAATTAGAAAATAGTGAAAAATTTAACAC
TAACATTGAAATGTTTGCTAAAGTATTAGCATTTGATTTAAATGATAGTTCATTAATTGGTAGTTTATCATCTGGTATGG
TACAAAAATTAAAAATTATTTTAGCAATATCTGGAGATAAAGAAATTTTAATTTTTGATGAACCAACAAGAGGATTAGAT
CCAATTGCTGTAGAATTATTTGAAAAAATTATGGATAAATTAAAAGAAAAAGATTTAACTATTATTTATTGTAGTCATAT
TCTAGACGAAGTTGAAAAATTTTGTGATCGTGGATTAATTATTAAAGATAACACTATTGTTAAAGATGTAAATATTAAAG
ATCATAAATCAAATTTAAGAGAAAGCTTTAAATCATTTTATGAATTTACTGAAATAGGGGATTTTTAA

Upstream 100 bases:

>100_bases
ATAAAAATACTTAAATTAAATATTTTTTAAAAGACCATATGGTCTTTTTTATTTTATATTTAGTTATAATCTATTTTAAA
TAAGGTTAAAGGTATTATTT

Downstream 100 bases:

>100_bases
TTATGAGATCAAATAATAAAAAAATGCATTTAAGTGCAAAATTTCCTACTAAAAATAAATTTGCTATTTATTTTAAATAT
AACTTCTTTAATGGCTTCAA

Product: putative multidrug ABC transporter ATP-binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MIEFKNVDKMFASNKGLKGVNIIIDKEQIGLVGPNGAGKTTFIELLLGFHLPRKGEILINGIKSTDKNFDISKIGYISAN
LDIPKKLSVSEYVGYIKELENSEKFNTNIEMFAKVLAFDLNDSSLIGSLSSGMVQKLKIILAISGDKEILIFDEPTRGLD
PIAVELFEKIMDKLKEKDLTIIYCSHILDEVEKFCDRGLIIKDNTIVKDVNIKDHKSNLRESFKSFYEFTEIGDF

Sequences:

>Translated_235_residues
MIEFKNVDKMFASNKGLKGVNIIIDKEQIGLVGPNGAGKTTFIELLLGFHLPRKGEILINGIKSTDKNFDISKIGYISAN
LDIPKKLSVSEYVGYIKELENSEKFNTNIEMFAKVLAFDLNDSSLIGSLSSGMVQKLKIILAISGDKEILIFDEPTRGLD
PIAVELFEKIMDKLKEKDLTIIYCSHILDEVEKFCDRGLIIKDNTIVKDVNIKDHKSNLRESFKSFYEFTEIGDF
>Mature_235_residues
MIEFKNVDKMFASNKGLKGVNIIIDKEQIGLVGPNGAGKTTFIELLLGFHLPRKGEILINGIKSTDKNFDISKIGYISAN
LDIPKKLSVSEYVGYIKELENSEKFNTNIEMFAKVLAFDLNDSSLIGSLSSGMVQKLKIILAISGDKEILIFDEPTRGLD
PIAVELFEKIMDKLKEKDLTIIYCSHILDEVEKFCDRGLIIKDNTIVKDVNIKDHKSNLRESFKSFYEFTEIGDF

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=178, Percent_Identity=27.5280898876405, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI105990541, Length=209, Percent_Identity=29.6650717703349, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI116734710, Length=204, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI153792144, Length=198, Percent_Identity=25.2525252525253, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI27477115, Length=188, Percent_Identity=26.5957446808511, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI45446740, Length=197, Percent_Identity=30.4568527918782, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI47078218, Length=197, Percent_Identity=30.4568527918782, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI6005701, Length=178, Percent_Identity=27.5280898876405, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI31657092, Length=204, Percent_Identity=27.9411764705882, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI27881501, Length=203, Percent_Identity=30.5418719211823, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27262624, Length=184, Percent_Identity=28.2608695652174, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI27262626, Length=184, Percent_Identity=28.2608695652174, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI30795238, Length=202, Percent_Identity=29.7029702970297, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI21536376, Length=182, Percent_Identity=32.4175824175824, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI215820660, Length=165, Percent_Identity=32.1212121212121, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI20143975, Length=165, Percent_Identity=32.1212121212121, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI46592971, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI46592915, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI46592978, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI46592956, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI46592898, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI46592964, Length=164, Percent_Identity=30.4878048780488, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081782, Length=230, Percent_Identity=28.2608695652174, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790525, Length=233, Percent_Identity=31.3304721030043, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI48994943, Length=205, Percent_Identity=32.1951219512195, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87081709, Length=211, Percent_Identity=26.5402843601896, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI48995001, Length=217, Percent_Identity=27.6497695852535, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=27.4774774774775, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788210, Length=228, Percent_Identity=26.3157894736842, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788897, Length=241, Percent_Identity=22.8215767634855, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788472, Length=220, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786253, Length=186, Percent_Identity=24.7311827956989, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787029, Length=236, Percent_Identity=26.6949152542373, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786398, Length=228, Percent_Identity=26.7543859649123, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=23.2876712328767, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789991, Length=215, Percent_Identity=27.4418604651163, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786872, Length=238, Percent_Identity=26.4705882352941, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789593, Length=212, Percent_Identity=26.4150943396226, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082268, Length=217, Percent_Identity=25.3456221198157, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788450, Length=241, Percent_Identity=22.4066390041494, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=25.1121076233184, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789891, Length=197, Percent_Identity=27.9187817258883, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788761, Length=213, Percent_Identity=21.1267605633803, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787712, Length=227, Percent_Identity=25.1101321585903, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786345, Length=182, Percent_Identity=29.1208791208791, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790162, Length=217, Percent_Identity=26.2672811059908, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789032, Length=203, Percent_Identity=25.615763546798, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786319, Length=241, Percent_Identity=26.5560165975104, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788165, Length=208, Percent_Identity=26.4423076923077, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=201, Percent_Identity=28.8557213930348, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71983523, Length=207, Percent_Identity=27.536231884058, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71983516, Length=207, Percent_Identity=27.536231884058, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71983510, Length=207, Percent_Identity=27.536231884058, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17565586, Length=199, Percent_Identity=29.6482412060301, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI115533608, Length=221, Percent_Identity=30.316742081448, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=243, Percent_Identity=25.9259259259259, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=213, Percent_Identity=28.6384976525822, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24643674, Length=212, Percent_Identity=27.3584905660377, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24666092, Length=216, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221512771, Length=216, Percent_Identity=26.8518518518519, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24650855, Length=206, Percent_Identity=28.1553398058252, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650853, Length=206, Percent_Identity=28.1553398058252, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI85726357, Length=237, Percent_Identity=30.8016877637131, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281362751, Length=206, Percent_Identity=28.1553398058252, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI85725262, Length=197, Percent_Identity=27.9187817258883, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648314, Length=210, Percent_Identity=28.0952380952381, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI281363262, Length=227, Percent_Identity=28.1938325991189, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24653245, Length=227, Percent_Identity=28.1938325991189, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24582014, Length=206, Percent_Identity=28.1553398058252, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582012, Length=206, Percent_Identity=28.1553398058252, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221500365, Length=216, Percent_Identity=21.7592592592593, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007184, Length=216, Percent_Identity=21.7592592592593, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 26464; Mature: 26464

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEFKNVDKMFASNKGLKGVNIIIDKEQIGLVGPNGAGKTTFIELLLGFHLPRKGEILIN
CCCCCCHHHHHHCCCCCCCEEEEEEHHHEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE
GIKSTDKNFDISKIGYISANLDIPKKLSVSEYVGYIKELENSEKFNTNIEMFAKVLAFDL
ECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
NDSSLIGSLSSGMVQKLKIILAISGDKEILIFDEPTRGLDPIAVELFEKIMDKLKEKDLT
CCCHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEE
IIYCSHILDEVEKFCDRGLIIKDNTIVKDVNIKDHKSNLRESFKSFYEFTEIGDF
EEEHHHHHHHHHHHHHCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIEFKNVDKMFASNKGLKGVNIIIDKEQIGLVGPNGAGKTTFIELLLGFHLPRKGEILIN
CCCCCCHHHHHHCCCCCCCEEEEEEHHHEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE
GIKSTDKNFDISKIGYISANLDIPKKLSVSEYVGYIKELENSEKFNTNIEMFAKVLAFDL
ECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
NDSSLIGSLSSGMVQKLKIILAISGDKEILIFDEPTRGLDPIAVELFEKIMDKLKEKDLT
CCCHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEE
IIYCSHILDEVEKFCDRGLIIKDNTIVKDVNIKDHKSNLRESFKSFYEFTEIGDF
EEEHHHHHHHHHHHHHCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]