| Definition | Mesoplasma florum L1, complete genome. |
|---|---|
| Accession | NC_006055 |
| Length | 793,224 |
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The map label for this gene is hsdR [H]
Identifier: 50365130
GI number: 50365130
Start: 365694
End: 368411
Strand: Direct
Name: hsdR [H]
Synonym: Mfl314
Alternate gene names: 50365130
Gene position: 365694-368411 (Clockwise)
Preceding gene: 50365129
Following gene: 50365131
Centisome position: 46.1
GC content: 22.44
Gene sequence:
>2718_bases ATGAAAGAAAAACTATTTACAAATAAAGATGAACAAAAATTACTAGAAGAAATAAATAATGAAATATTAACTTCTAATGA AGTTTATTTAATTTATCCTTTTATATCTAAAAGTATCCTTAATAAAATAGCTCCAACTTTTGAATTCTGTGCAAAAAACA ATATTCAAATTAAAATTATCTCAACAACATTTGATGATCTAGCTCAATATAATAATTTGAATGAACTTAAACTATTAGCT GATAAGTATTCTAATATCAAAATAAAAATAGAAGATAACTTAGAAAGAACTAGTGAAAGAATTCATATAAAAGCTTCAAT TTTTAAACGAAATCATGAATTATCAACTGCAATTATGGGTTCTTCTAATTTAACTGTTAAGGGAATGATTTCTGGAAGAG AATGAAATATTAAATTAACAGAACAAAATAATAAAGAATTAATTAATAAAATGATTAATGAATTTGATAATTTATGAAAT GAAGAATTTGTTGATTTTTCAAATGAGTTTGAAAGAGAATTATTAATTCAAAAGATTAAAGAAAACCAGCAAGCAGTAGT TCAATCAAAAATAGAATTATTATCTAATAATTTAACTAAAAAATACTTATATAAATTTCAAAAAGAAATTATTGATAAAC TAAGTTATCGAAGACATATTAATAAAAATAAAAACTTAGTCATTATGGCCACAGGAACAGGCAAAACACTAGTTTCTGCA TTTGATTACAAAAGACAATCAGGACAAGCTAAAAAGGACCTTAAAATCCTATTTTTAGCACATCAAAGAGAAATAGTTGA CCAAGCAATCAAAACTTATCGCCATGTGCTTGAGAATAATAAATTTGGTGAAGTTATGTATGATGGAAGTATTAATAGTG AAAAACCAATTCACCTATTTGCAACAATTCAAACCTTGTCCACAAGATTGAATAAATTCAAACCAAACGATTTTGACATT ATTGTATATGATGAAGCTCATCATATAGCAGCAAATACTTTTGATAAAGTATTTAACTATTTTAAACCTCAACAAATCTT AGGTTTAACAGCAACTCCTGAAAGAGAAGACAATAAAGATATTAAAGCATATTTTGATGATGAATATGCTACTGAATTAA GACTATGAGATGCTATTGATCAAAAACTATTATGTCCATTTGATTATTATTGTATAGATGATACTAATACTAATTTACAA GGAGTTAATTTAAACTCTGATAAAGATATTTTTAAAGTAGTTAACACTGATTCTAGAAATGAATTGTTATTTAAAACAAT TGAAAAATATTTAGGTGTTTATGCAAGACCAACAGCATTAATCTTTTGTGTTACAGTAGAACATGCTATTAATATATCAA ATTACTTAAACTCAAAGAATTTAAAAGCAGAAGTTTTAACTTCACAAAATACAAAAGATCGTAAAAGAATCTTACATGAA TTTAGTACAGGAAGAATTAACTATTTATGTGTTGTTAATATTTTTAATGAAGGAGTAGATATTCCTGAAATTAATACTAT TATTTTGTTAAGACCAACAAATTCTAAAACAGTATATTTACAACAACTTGGTAGAGGTTTAAGAAAAACAGAACTTAAAA ATAAACTAGAAGTATATGATCTAATTTCTAATATAGATAATAAATATGATATTACTTTAGGAATTAGAAATTTATTTAAT CCTGCTATTAGAAGTAGTAAGTCAATTAGTGCTAAAGAAGGTTTACCTTATAATTGCACAATTAACTTAGAAAAGCATAC TGAAGAAATTATTATTAACAGTATGAAGAGTTGATATTTAAATAAAAACTCAATGAAATCATATATTGTTGAATATTATG AAAGATTTAAAGAAAAAGCTCTTAATAATATATTGAAAGATTATGATTTAACTTTAATAGATTTTTATAATAATTTAGAT AACTTATTTATACCAATTGCTAAACAAATTAATAACTTTAATCAAAATGAAAATAACACTAATAGAAACAAAAACATTTT AAAACAGTTTTTATTCTTAAATAATCATAAAATTATTGATTACTTTTATAAAAGACTATCAAACCAATTATCAAGTAATG AAATTAACTTAGACTTAGATAATTTATTAATTACTTCTTGTTTATATGAAATAACTAGTTTTGATAAATTTTTAGATATT TATCCTAACTATTTAAAAATTAATGATTTAGTAAAAAACTTTATTGATGAGCATAAAGTGATTGTAGAAGAGTTAGTAAT GATTCTTAAATACAAATTAGATAATGAAACTTTAATTTTTGAAAACGAGTATGAAATAGGATTGAATATAAATTCAACTT ATACTGTAAAACAAGTTTTATCATTAGTTAATCGTACTAACTTTTTACATTATCGAACTGAAATGAAAGTTTTGACATTT CAAGCAGGGTTTTTAACTTTTGATAACTCAAAACAAATCATTTTAGCTGATGAAGACAGTGATAATTATGGTAAAAAAAC TAAATATGATGAATTGAATAATATATTCTATTGATCTTTACCTGAAAAAATGACAATTAAAAATAAAATAGTTAGTGATT TTGAAAATGAATATATTAAAAAATACTTGTTTATTCAAGATCAACAAAACGTCAACAAAAAGAACTTATATTTAAAGCTT TATAAATTTGTAGGTATTGGTAAATTTGAAAAAATGTTAATTGATGATGTTCTTACAGCTAAATTTAAGTTAAAATAA
Upstream 100 bases:
>100_bases TTTTTAATTCTAATTTTAAGTGTAGTACTTATGGCATGATTTCCTAAGTACTACATTTTTGTTTAAAAGTATGAGAAAAT TAACAAAACATGGAGAACAA
Downstream 100 bases:
>100_bases ACTAAATTAAAGTATTAAAGGCGGAAACAATAATGGAAAATATAAATTACAAAAAAGCAAAGAAACAAATTAGAAAATAT AAATATACTTTTTTAAAAGT
Product: DNA repair DNA/RNA helicase
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 905; Mature: 905
Protein sequence:
>905_residues MKEKLFTNKDEQKLLEEINNEILTSNEVYLIYPFISKSILNKIAPTFEFCAKNNIQIKIISTTFDDLAQYNNLNELKLLA DKYSNIKIKIEDNLERTSERIHIKASIFKRNHELSTAIMGSSNLTVKGMISGREWNIKLTEQNNKELINKMINEFDNLWN EEFVDFSNEFERELLIQKIKENQQAVVQSKIELLSNNLTKKYLYKFQKEIIDKLSYRRHINKNKNLVIMATGTGKTLVSA FDYKRQSGQAKKDLKILFLAHQREIVDQAIKTYRHVLENNKFGEVMYDGSINSEKPIHLFATIQTLSTRLNKFKPNDFDI IVYDEAHHIAANTFDKVFNYFKPQQILGLTATPEREDNKDIKAYFDDEYATELRLWDAIDQKLLCPFDYYCIDDTNTNLQ GVNLNSDKDIFKVVNTDSRNELLFKTIEKYLGVYARPTALIFCVTVEHAINISNYLNSKNLKAEVLTSQNTKDRKRILHE FSTGRINYLCVVNIFNEGVDIPEINTIILLRPTNSKTVYLQQLGRGLRKTELKNKLEVYDLISNIDNKYDITLGIRNLFN PAIRSSKSISAKEGLPYNCTINLEKHTEEIIINSMKSWYLNKNSMKSYIVEYYERFKEKALNNILKDYDLTLIDFYNNLD NLFIPIAKQINNFNQNENNTNRNKNILKQFLFLNNHKIIDYFYKRLSNQLSSNEINLDLDNLLITSCLYEITSFDKFLDI YPNYLKINDLVKNFIDEHKVIVEELVMILKYKLDNETLIFENEYEIGLNINSTYTVKQVLSLVNRTNFLHYRTEMKVLTF QAGFLTFDNSKQIILADEDSDNYGKKTKYDELNNIFYWSLPEKMTIKNKIVSDFENEYIKKYLFIQDQQNVNKKNLYLKL YKFVGIGKFEKMLIDDVLTAKFKLK
Sequences:
>Translated_905_residues MKEKLFTNKDEQKLLEEINNEILTSNEVYLIYPFISKSILNKIAPTFEFCAKNNIQIKIISTTFDDLAQYNNLNELKLLA DKYSNIKIKIEDNLERTSERIHIKASIFKRNHELSTAIMGSSNLTVKGMISGRE*NIKLTEQNNKELINKMINEFDNL*N EEFVDFSNEFERELLIQKIKENQQAVVQSKIELLSNNLTKKYLYKFQKEIIDKLSYRRHINKNKNLVIMATGTGKTLVSA FDYKRQSGQAKKDLKILFLAHQREIVDQAIKTYRHVLENNKFGEVMYDGSINSEKPIHLFATIQTLSTRLNKFKPNDFDI IVYDEAHHIAANTFDKVFNYFKPQQILGLTATPEREDNKDIKAYFDDEYATELRL*DAIDQKLLCPFDYYCIDDTNTNLQ GVNLNSDKDIFKVVNTDSRNELLFKTIEKYLGVYARPTALIFCVTVEHAINISNYLNSKNLKAEVLTSQNTKDRKRILHE FSTGRINYLCVVNIFNEGVDIPEINTIILLRPTNSKTVYLQQLGRGLRKTELKNKLEVYDLISNIDNKYDITLGIRNLFN PAIRSSKSISAKEGLPYNCTINLEKHTEEIIINSMKS*YLNKNSMKSYIVEYYERFKEKALNNILKDYDLTLIDFYNNLD NLFIPIAKQINNFNQNENNTNRNKNILKQFLFLNNHKIIDYFYKRLSNQLSSNEINLDLDNLLITSCLYEITSFDKFLDI YPNYLKINDLVKNFIDEHKVIVEELVMILKYKLDNETLIFENEYEIGLNINSTYTVKQVLSLVNRTNFLHYRTEMKVLTF QAGFLTFDNSKQIILADEDSDNYGKKTKYDELNNIFY*SLPEKMTIKNKIVSDFENEYIKKYLFIQDQQNVNKKNLYLKL YKFVGIGKFEKMLIDDVLTAKFKLK >Mature_905_residues MKEKLFTNKDEQKLLEEINNEILTSNEVYLIYPFISKSILNKIAPTFEFCAKNNIQIKIISTTFDDLAQYNNLNELKLLA DKYSNIKIKIEDNLERTSERIHIKASIFKRNHELSTAIMGSSNLTVKGMISGRE*NIKLTEQNNKELINKMINEFDNL*N EEFVDFSNEFERELLIQKIKENQQAVVQSKIELLSNNLTKKYLYKFQKEIIDKLSYRRHINKNKNLVIMATGTGKTLVSA FDYKRQSGQAKKDLKILFLAHQREIVDQAIKTYRHVLENNKFGEVMYDGSINSEKPIHLFATIQTLSTRLNKFKPNDFDI IVYDEAHHIAANTFDKVFNYFKPQQILGLTATPEREDNKDIKAYFDDEYATELRL*DAIDQKLLCPFDYYCIDDTNTNLQ GVNLNSDKDIFKVVNTDSRNELLFKTIEKYLGVYARPTALIFCVTVEHAINISNYLNSKNLKAEVLTSQNTKDRKRILHE FSTGRINYLCVVNIFNEGVDIPEINTIILLRPTNSKTVYLQQLGRGLRKTELKNKLEVYDLISNIDNKYDITLGIRNLFN PAIRSSKSISAKEGLPYNCTINLEKHTEEIIINSMKS*YLNKNSMKSYIVEYYERFKEKALNNILKDYDLTLIDFYNNLD NLFIPIAKQINNFNQNENNTNRNKNILKQFLFLNNHKIIDYFYKRLSNQLSSNEINLDLDNLLITSCLYEITSFDKFLDI YPNYLKINDLVKNFIDEHKVIVEELVMILKYKLDNETLIFENEYEIGLNINSTYTVKQVLSLVNRTNFLHYRTEMKVLTF QAGFLTFDNSKQIILADEDSDNYGKKTKYDELNNIFY*SLPEKMTIKNKIVSDFENEYIKKYLFIQDQQNVNKKNLYLKL YKFVGIGKFEKMLIDDVLTAKFKLK
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320539, Length=375, Percent_Identity=27.2, Blast_Score=136, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 105445; Mature: 105445
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEKLFTNKDEQKLLEEINNEILTSNEVYLIYPFISKSILNKIAPTFEFCAKNNIQIKII CCCCCCCCCHHHHHHHHHCHHHCCCCCEEEEEHHHHHHHHHHHCCHHHHHCCCCCEEEEE STTFDDLAQYNNLNELKLLADKYSNIKIKIEDNLERTSERIHIKASIFKRNHELSTAIMG ECCHHHHHHHCCCCHHHHHHHCCCCEEEEECCCHHCCCCEEEEEEEEHHCCCCCEEEEEC SSNLTVKGMISGRENIKLTEQNNKELINKMINEFDNLNEEFVDFSNEFERELLIQKIKEN CCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QQAVVQSKIELLSNNLTKKYLYKFQKEIIDKLSYRRHINKNKNLVIMATGTGKTLVSAFD HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH YKRQSGQAKKDLKILFLAHQREIVDQAIKTYRHVLENNKFGEVMYDGSINSEKPIHLFAT HHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEE IQTLSTRLNKFKPNDFDIIVYDEAHHIAANTFDKVFNYFKPQQILGLTATPEREDNKDIK HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCEE AYFDDEYATELRLDAIDQKLLCPFDYYCIDDTNTNLQGVNLNSDKDIFKVVNTDSRNELL EEECCCHHHHHHHHHHCCHHCCCCCEEEECCCCCCEEEECCCCCCHHHHEECCCCCCHHH FKTIEKYLGVYARPTALIFCVTVEHAINISNYLNSKNLKAEVLTSQNTKDRKRILHEFST HHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC GRINYLCVVNIFNEGVDIPEINTIILLRPTNSKTVYLQQLGRGLRKTELKNKLEVYDLIS CCEEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHH NIDNKYDITLGIRNLFNPAIRSSKSISAKEGLPYNCTINLEKHTEEIIINSMKSYLNKNS CCCCCEEEEEEHHHHCCHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCH MKSYIVEYYERFKEKALNNILKDYDLTLIDFYNNLDNLFIPIAKQINNFNQNENNTNRNK HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHHCCCCCCCCCCCCHH NILKQFLFLNNHKIIDYFYKRLSNQLSSNEINLDLDNLLITSCLYEITSFDKFLDIYPNY HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC LKINDLVKNFIDEHKVIVEELVMILKYKLDNETLIFENEYEIGLNINSTYTVKQVLSLVN EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCHHHHHHHHHHH RTNFLHYRTEMKVLTFQAGFLTFDNSKQIILADEDSDNYGKKTKYDELNNIFYSLPEKMT HCCEEEEEEEEEEEEEEECEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHH IKNKIVSDFENEYIKKYLFIQDQQNVNKKNLYLKLYKFVGIGKFEKMLIDDVLTAKFKLK HHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHEEEEHHHCCCHHHHHHHHHHHHCEEECC >Mature Secondary Structure MKEKLFTNKDEQKLLEEINNEILTSNEVYLIYPFISKSILNKIAPTFEFCAKNNIQIKII CCCCCCCCCHHHHHHHHHCHHHCCCCCEEEEEHHHHHHHHHHHCCHHHHHCCCCCEEEEE STTFDDLAQYNNLNELKLLADKYSNIKIKIEDNLERTSERIHIKASIFKRNHELSTAIMG ECCHHHHHHHCCCCHHHHHHHCCCCEEEEECCCHHCCCCEEEEEEEEHHCCCCCEEEEEC SSNLTVKGMISGRENIKLTEQNNKELINKMINEFDNLNEEFVDFSNEFERELLIQKIKEN CCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QQAVVQSKIELLSNNLTKKYLYKFQKEIIDKLSYRRHINKNKNLVIMATGTGKTLVSAFD HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH YKRQSGQAKKDLKILFLAHQREIVDQAIKTYRHVLENNKFGEVMYDGSINSEKPIHLFAT HHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEE IQTLSTRLNKFKPNDFDIIVYDEAHHIAANTFDKVFNYFKPQQILGLTATPEREDNKDIK HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCEE AYFDDEYATELRLDAIDQKLLCPFDYYCIDDTNTNLQGVNLNSDKDIFKVVNTDSRNELL EEECCCHHHHHHHHHHCCHHCCCCCEEEECCCCCCEEEECCCCCCHHHHEECCCCCCHHH FKTIEKYLGVYARPTALIFCVTVEHAINISNYLNSKNLKAEVLTSQNTKDRKRILHEFST HHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC GRINYLCVVNIFNEGVDIPEINTIILLRPTNSKTVYLQQLGRGLRKTELKNKLEVYDLIS CCEEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHH NIDNKYDITLGIRNLFNPAIRSSKSISAKEGLPYNCTINLEKHTEEIIINSMKSYLNKNS CCCCCEEEEEEHHHHCCHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCH MKSYIVEYYERFKEKALNNILKDYDLTLIDFYNNLDNLFIPIAKQINNFNQNENNTNRNK HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHHCCCCCCCCCCCCHH NILKQFLFLNNHKIIDYFYKRLSNQLSSNEINLDLDNLLITSCLYEITSFDKFLDIYPNY HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC LKINDLVKNFIDEHKVIVEELVMILKYKLDNETLIFENEYEIGLNINSTYTVKQVLSLVN EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCHHHHHHHHHHH RTNFLHYRTEMKVLTFQAGFLTFDNSKQIILADEDSDNYGKKTKYDELNNIFYSLPEKMT HCCEEEEEEEEEEEEEEECEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHH IKNKIVSDFENEYIKKYLFIQDQQNVNKKNLYLKLYKFVGIGKFEKMLIDDVLTAKFKLK HHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHEEEEHHHCCCHHHHHHHHHHHHCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]