Click here to switch to the map view.

The map label for this gene is recU [H]

Identifier: 50365019

GI number: 50365019

Start: 228630

End: 229130

Strand: Reverse

Name: recU [H]

Synonym: Mfl203

Alternate gene names: 50365019

Gene position: 229130-228630 (Counterclockwise)

Preceding gene: 50365031

Following gene: 50365008

Centisome position: 28.89

GC content: 21.76

Gene sequence:

>501_bases
ATGAATCCTATTAAAAATCAAGGAATGTTTCTTGAGACTTTGCTTAATATAACGCATCAAAAATATATTGATAATAATGA
TTGTGTTGTATCAAAGATACCAACTAATATAATTCCCATAACTACAAAAAATAATCAAATCACAAGTGCTAAATTTAAAG
ATAGTTTAAATTGTGATTACATTGGAGCATATAAAGGAACTTACTTTGAGTTTGAAGCAAAAGAAACTTATAAAGATTAT
TTTGATTTTCATTTAATCAGAAAAAATCAAAATGAAAAGTTAAAGTTAGTTCTAAATAATAAAGGAATAGCCTTTATTAT
AGTTTACTTTGGGAATTATGAAGAATTTTTCTTAGTTAACTATTTAACTTTAATTAATTGAGTCAACAAAAATAAAAAAA
CCATTCCTTATGAATGATTTTTAGATAATGCTTATCAAGTTTATTTAGATAATGAATTTAAATTAAATTATCTACCTAAA
CTTAATTTTCTAATCAGTTAA

Upstream 100 bases:

>100_bases
TATATTAGGTTTTTTCATAAAATACCTCCGTTCAATATTATTTATTTTATCATGTAATTAAAAATAAAAAAATCCCTTAA
TACTAATATGAGGTGAATGT

Downstream 100 bases:

>100_bases
ACTTTAATGATTTTTCTATTTTGTTTGAATATTTACCAATTAACTTAAGGAATGTATCATAATCGCTTATTTGATGTTTA
TATAGTATGTCTAATACTTG

Product: recombination protein U

Products: NA

Alternate protein names: Recombination protein U homolog [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MNPIKNQGMFLETLLNITHQKYIDNNDCVVSKIPTNIIPITTKNNQITSAKFKDSLNCDYIGAYKGTYFEFEAKETYKDY
FDFHLIRKNQNEKLKLVLNNKGIAFIIVYFGNYEEFFLVNYLTLINWVNKNKKTIPYEWFLDNAYQVYLDNEFKLNYLPK
LNFLIS

Sequences:

>Translated_166_residues
MNPIKNQGMFLETLLNITHQKYIDNNDCVVSKIPTNIIPITTKNNQITSAKFKDSLNCDYIGAYKGTYFEFEAKETYKDY
FDFHLIRKNQNEKLKLVLNNKGIAFIIVYFGNYEEFFLVNYLTLIN*VNKNKKTIPYE*FLDNAYQVYLDNEFKLNYLPK
LNFLIS
>Mature_166_residues
MNPIKNQGMFLETLLNITHQKYIDNNDCVVSKIPTNIIPITTKNNQITSAKFKDSLNCDYIGAYKGTYFEFEAKETYKDY
FDFHLIRKNQNEKLKLVLNNKGIAFIIVYFGNYEEFFLVNYLTLIN*VNKNKKTIPYE*FLDNAYQVYLDNEFKLNYLPK
LNFLIS

Specific function: Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair

COG id: COG3331

COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004612
- InterPro:   IPR011335 [H]

Pfam domain/function: PF03838 RecU [H]

EC number: NA

Molecular weight: Translated: 19371; Mature: 19371

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPIKNQGMFLETLLNITHQKYIDNNDCVVSKIPTNIIPITTKNNQITSAKFKDSLNCDY
CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCE
IGAYKGTYFEFEAKETYKDYFDFHLIRKNQNEKLKLVLNNKGIAFIIVYFGNYEEFFLVN
EECCCCEEEEEECHHHHHHHHEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEEE
YLTLINVNKNKKTIPYEFLDNAYQVYLDNEFKLNYLPKLNFLIS
EEEEEEECCCCCCCCHHHHCCEEEEEECCCEEEEECCCEEEEEC
>Mature Secondary Structure
MNPIKNQGMFLETLLNITHQKYIDNNDCVVSKIPTNIIPITTKNNQITSAKFKDSLNCDY
CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCE
IGAYKGTYFEFEAKETYKDYFDFHLIRKNQNEKLKLVLNNKGIAFIIVYFGNYEEFFLVN
EECCCCEEEEEECHHHHHHHHEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEEEE
YLTLINVNKNKKTIPYEFLDNAYQVYLDNEFKLNYLPKLNFLIS
EEEEEEECCCCCCCCHHHHCCEEEEEECCCEEEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]