Click here to switch to the map view.

The map label for this gene is yocD [H]

Identifier: 49188201

GI number: 49188201

Start: 5103383

End: 5104369

Strand: Direct

Name: yocD [H]

Synonym: BAS5215

Alternate gene names: 49188201

Gene position: 5103383-5104369 (Clockwise)

Preceding gene: 49188195

Following gene: 49188203

Centisome position: 97.6

GC content: 35.36

Gene sequence:

>987_bases
ATGCTACCAACAAAATTAAAAAAGGGTGATGAAATTAGAGTTATTTCACCATCCTGTAGTTTAAGTATTGTCTCAACTGA
AAACAGGAGGCTTGCTGTAAAAAGATTAACCGAACTCGGCTTTCACGTTACATTCTCAACACATGCTGAAGAAATAGATC
GATTCGCTTCCTCTTCTATTTCTTCACGCGTTCAAGACCTCCACGAAGCATTTAGAGATCCAAATGTCAAAGCCATTTTG
ACGACACTTGGCGGATACAACTCTAATGGTTTATTAAAATATCTCGATTACGATTTAATTCGTGAAAATCCGAAATTTTT
CTGTGGTTATTCAGATATTACTGCTTTAAATAATGCAATTTACACTAAAACAGGACTTGTTACATATTCAGGCCCCCATT
TCTCTTCATTTGGAATGGAGAAAGGACTCGAGTATACAACCGATTACTTTTTACAATGCTTAACTTCTAATAAGCCTATT
GAAGTCCTGCCATCTGAAACATGGAGCGATGATTCTTGGTATATAGATCAAGAAAATCGAAAATTTATTAAAAATGAAGG
ATACGTTTCGATTCACGAAGGAGAAGCTACTGGAGATATTATCGGTGGTAATATGAGCACATTGAACTTACTGCAAGGTA
CATCATATATGCCAAACTTAAAGGATAAAATTTTATTTCTTGAAGAGGATAGTTTAACTGGAACATCTACTCTTAAAACT
TTTGATCGCTATTTACACTCTCTTATGCAGCAACAAAATTTTAAACATGTAAAAGGCATCGTTATAGGAAAGATGCAAAA
AGGCGCAGAATGTACGATAGAAGACATTCAAGAAATGATTGCTTCAAAGCCTGAACTGGCACATATCCCTATCATTGCAA
ATGCAAGTTTCGGTCATACAACCCCGATTTTTACTTTCCCAATTGGCGGACGTGCAACAATCATTTCTAGTAAAGAAAAG
ACATCTATCACTATTTTAACGCACTAA

Upstream 100 bases:

>100_bases
AGGAAAACTCCATTTCAAAAAATAATTCACTTTCACTTTATTTCATATGCTAAAATATTTTTTAAGTCTAAATATTCTTT
CATTTAAAGAGGTGAAATAG

Downstream 100 bases:

>100_bases
AAAAGGAGCGAATGAGTCGCTCCTTTTATCGTTTTTCTATTTTTTCCAACGCTTTTTGCGGAATTGACTCTTTCGGGATT
TCAGCCCATCCTTTTCCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAIL
TTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPI
EVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTSYMPNLKDKILFLEEDSLTGTSTLKT
FDRYLHSLMQQQNFKHVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEK
TSITILTH

Sequences:

>Translated_328_residues
MLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAIL
TTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPI
EVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTSYMPNLKDKILFLEEDSLTGTSTLKT
FDRYLHSLMQQQNFKHVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEK
TSITILTH
>Mature_328_residues
MLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAIL
TTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPI
EVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTSYMPNLKDKILFLEEDSLTGTSTLKT
FDRYLHSLMQQQNFKHVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEK
TSITILTH

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=316, Percent_Identity=25.6329113924051, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 36689; Mature: 36689

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSI
CCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH
SSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAI
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCHHHHHCCCCEEECCHHHHHHCCEE
YTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENR
EEECCEEEECCCCCCCCCHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCC
KFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTSYMPNLKDKILFLEEDSLTGTSTLKT
CEECCCCEEEEECCCCCCCEECCCCCEEHEECCCCCCCCCCCEEEEEECCCCCCHHHHHH
FDRYLHSLMQQQNFKHVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHT
HHHHHHHHHHHCCCHHHCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCC
TPIFTFPIGGRATIISSKEKTSITILTH
CCEEEECCCCEEEEEECCCCCEEEEEEC
>Mature Secondary Structure
MLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSI
CCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH
SSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAI
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCHHHHHCCCCEEECCHHHHHHCCEE
YTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENR
EEECCEEEECCCCCCCCCHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCC
KFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTSYMPNLKDKILFLEEDSLTGTSTLKT
CEECCCCEEEEECCCCCCCEECCCCCEEHEECCCCCCCCCCCEEEEEECCCCCCHHHHHH
FDRYLHSLMQQQNFKHVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHT
HHHHHHHHHHHCCCHHHCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCC
TPIFTFPIGGRATIISSKEKTSITILTH
CCEEEECCCCEEEEEECCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]