Click here to switch to the map view.

The map label for this gene is yusF [H]

Identifier: 49187848

GI number: 49187848

Start: 4742249

End: 4742593

Strand: Reverse

Name: yusF [H]

Synonym: BAS4858

Alternate gene names: 49187848

Gene position: 4742593-4742249 (Counterclockwise)

Preceding gene: 49187849

Following gene: 49187847

Centisome position: 90.7

GC content: 37.1

Gene sequence:

>345_bases
ATGATTTATGTAGAAAAAGTCATTATTGTAGAAGGTACATCAGATAGAAGAAAGATTGAATCTATTATTCGGGAACCAGT
GGAAATTGTTTGTACAAATGGTACAATTGGTTTGTCGACAATGGATGAGCTCGTTGATCAGTTTTTTGATAAGGAAGTGT
ATGTGCTAGTGGATGCTGATGATGCTGGAGAAAAGTTAAGGAAACAATTTCGAAAAGAATTTCCGCAAGCAGAGCATATT
TATATTGATCGCTCGTACCGAGAGGTGGCAACTGCGCCATCTTCACACTTAGCAAATGTATTATGGGGAGCTGACATTGA
CGTTTATACAGAATATTTACGGTAA

Upstream 100 bases:

>100_bases
TTTTCTTTTGCAAAAATAAACAGGAAACAACATGAAAATAACGAATATACTATATACTAAGTTAAAGGTTGTATAGTATA
TGGTGATCGGGTGATGACAT

Downstream 100 bases:

>100_bases
GGAATGATAGAAGTGATTGATTGGACAGGAGCCGAAGCTACAGCCCTAATAGAGAACGAAGAAAAAACAGTGTTATATGT
ATATACTCCAATGTGTGGAA

Product: TOPRIM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MIYVEKVIIVEGTSDRRKIESIIREPVEIVCTNGTIGLSTMDELVDQFFDKEVYVLVDADDAGEKLRKQFRKEFPQAEHI
YIDRSYREVATAPSSHLANVLWGADIDVYTEYLR

Sequences:

>Translated_114_residues
MIYVEKVIIVEGTSDRRKIESIIREPVEIVCTNGTIGLSTMDELVDQFFDKEVYVLVDADDAGEKLRKQFRKEFPQAEHI
YIDRSYREVATAPSSHLANVLWGADIDVYTEYLR
>Mature_114_residues
MIYVEKVIIVEGTSDRRKIESIIREPVEIVCTNGTIGLSTMDELVDQFFDKEVYVLVDADDAGEKLRKQFRKEFPQAEHI
YIDRSYREVATAPSSHLANVLWGADIDVYTEYLR

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 13173; Mature: 13173

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYVEKVIIVEGTSDRRKIESIIREPVEIVCTNGTIGLSTMDELVDQFFDKEVYVLVDAD
CEEEEEEEEEECCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
DAGEKLRKQFRKEFPQAEHIYIDRSYREVATAPSSHLANVLWGADIDVYTEYLR
CHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MIYVEKVIIVEGTSDRRKIESIIREPVEIVCTNGTIGLSTMDELVDQFFDKEVYVLVDAD
CEEEEEEEEEECCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
DAGEKLRKQFRKEFPQAEHIYIDRSYREVATAPSSHLANVLWGADIDVYTEYLR
CHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]