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The map label for this gene is sufB [H]

Identifier: 49187837

GI number: 49187837

Start: 4732089

End: 4733486

Strand: Reverse

Name: sufB [H]

Synonym: BAS4847

Alternate gene names: 49187837

Gene position: 4733486-4732089 (Counterclockwise)

Preceding gene: 49187838

Following gene: 49187834

Centisome position: 90.53

GC content: 40.27

Gene sequence:

>1398_bases
ATGGCGAAGCAACTGCCAGATATCGGCGATTATAAATATGGTTTCAAAGACAAAGACGTTTCGATTTTCCGTGCTGGACG
CGGTTTAACAAAAGAAATCGTTGAAGAGATTTCACGTATGAAAGAAGAACCACAGTGGATGTTAGACTTCCGTTTAAAAT
CACTGGATAAGTTCTATGAAATGCCAATGCCACAATGGGGCGGCGACTTAAACGACTTAGATTTCGATGAAATTACGTAC
TACGTAAAACCATCTGAGAAATCTGAGAAGTCTTGGGATGAAGTACCTGATGAAATTAAAGCTACATTTGATAAATTAGG
TATTCCAGAAGCTGAGCAAAAATATTTAGCGGGTGTATCTGCACAGTACGAATCTGAAGTTGTATACCACAACATGAAAG
AAGACCTAGAAGCTCTAGGAATCGTCTTCAAAGATACAGATAGCGCATTAAAAGAGAACGAAGATATTTTCCGTGAGCAT
TTCGGAAAAGTAATCCCACCAACAGACAACAAATTCTCTGCATTAAACTCTGCAGTTTGGTCTGGTGGATCATTCATCTA
CGTTCCAAAAGGTGTTAAAGTTGATACACCACTTCAAGCGTATTTCCGTATTAACTCTGAAAATATGGGACAATTCGAGC
GTACGCTTATCATCGTAGACGAAGGCGCACACGTACACTACGTAGAAGGTTGTACAGCACCTGTTTACACGACTAACTCA
CTTCATAGTGCGGTAGTAGAAATCATCATTAAGAAAGATGCATATTGCCGTTATACAACAATCCAAAACTGGGCGAACAA
CGTATACAACCTAGTTACAAAACGTGCGGTTTGTGAAGAAAACGCAACGATGGAATGGATTGACGGTAACCTCGGATCTA
AATTAACGATGAAATACCCAGCAGTTATCTTAAAAGGCGAAGGCGCTCGTGGTTTAACATTATCTATCGCGATTGCTGGT
AAAGGCCAACACCAAGATGCTGGTGCGAAAATGATTCACTTAGCACCAAACACATCTTCAACAATCGTTTCTAAATCGAT
TGCGAAGCATGGTGGTAAAGTAACTTACCGTGGTATCGTACACTTCGGACCAAAAGCGAAAAACTCTCGCTCTAACATCG
AGTGTGACACGTTAATCATGGATAACCAATCTACATCTGATACAATTCCTTACAACGAAATCAAAAACGATTACGTTTCA
CTTGAGCACGAAGCGAAAGTATCAAAAGTATCAGAAGAACAATTATTCTACCTAATGAGCCGCGGTATTTCTGAGCAAGA
AGCTACAGAAATGATCGTAATGGGCTTCATCGAGCCATTCACTCGCGAACTTCCAATGGAATACGCAGTTGAAATGAACC
GCCTAATCAAGTTTGAGATGGAAGGTTCTATTGGTTAA

Upstream 100 bases:

>100_bases
TGCAACATTAGCGTGGAAAGCGTTAGAAAAGGGCTTAAACGAAGATAAGTAATGTTAAAGGTTCCTAAAAACGAGGTTAT
CTAAGGAGGGACACACCAAC

Downstream 100 bases:

>100_bases
TATTTAAAGTGGAGGCGGCTCGTTCAGAATGTGAGGGGGATGGAGCTTCTGACGTAGAGGCGCTTTTTGCCTCATAGGAA
GAAGTGAAGCCACCGAACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MAKQLPDIGDYKYGFKDKDVSIFRAGRGLTKEIVEEISRMKEEPQWMLDFRLKSLDKFYEMPMPQWGGDLNDLDFDEITY
YVKPSEKSEKSWDEVPDEIKATFDKLGIPEAEQKYLAGVSAQYESEVVYHNMKEDLEALGIVFKDTDSALKENEDIFREH
FGKVIPPTDNKFSALNSAVWSGGSFIYVPKGVKVDTPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPVYTTNS
LHSAVVEIIIKKDAYCRYTTIQNWANNVYNLVTKRAVCEENATMEWIDGNLGSKLTMKYPAVILKGEGARGLTLSIAIAG
KGQHQDAGAKMIHLAPNTSSTIVSKSIAKHGGKVTYRGIVHFGPKAKNSRSNIECDTLIMDNQSTSDTIPYNEIKNDYVS
LEHEAKVSKVSEEQLFYLMSRGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG

Sequences:

>Translated_465_residues
MAKQLPDIGDYKYGFKDKDVSIFRAGRGLTKEIVEEISRMKEEPQWMLDFRLKSLDKFYEMPMPQWGGDLNDLDFDEITY
YVKPSEKSEKSWDEVPDEIKATFDKLGIPEAEQKYLAGVSAQYESEVVYHNMKEDLEALGIVFKDTDSALKENEDIFREH
FGKVIPPTDNKFSALNSAVWSGGSFIYVPKGVKVDTPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPVYTTNS
LHSAVVEIIIKKDAYCRYTTIQNWANNVYNLVTKRAVCEENATMEWIDGNLGSKLTMKYPAVILKGEGARGLTLSIAIAG
KGQHQDAGAKMIHLAPNTSSTIVSKSIAKHGGKVTYRGIVHFGPKAKNSRSNIECDTLIMDNQSTSDTIPYNEIKNDYVS
LEHEAKVSKVSEEQLFYLMSRGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG
>Mature_464_residues
AKQLPDIGDYKYGFKDKDVSIFRAGRGLTKEIVEEISRMKEEPQWMLDFRLKSLDKFYEMPMPQWGGDLNDLDFDEITYY
VKPSEKSEKSWDEVPDEIKATFDKLGIPEAEQKYLAGVSAQYESEVVYHNMKEDLEALGIVFKDTDSALKENEDIFREHF
GKVIPPTDNKFSALNSAVWSGGSFIYVPKGVKVDTPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPVYTTNSL
HSAVVEIIIKKDAYCRYTTIQNWANNVYNLVTKRAVCEENATMEWIDGNLGSKLTMKYPAVILKGEGARGLTLSIAIAGK
GQHQDAGAKMIHLAPNTSSTIVSKSIAKHGGKVTYRGIVHFGPKAKNSRSNIECDTLIMDNQSTSDTIPYNEIKNDYVSL
EHEAKVSKVSEEQLFYLMSRGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=478, Percent_Identity=40.3765690376569, Blast_Score=376, Evalue=1e-105,
Organism=Escherichia coli, GI1787971, Length=154, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 52524; Mature: 52393

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQLPDIGDYKYGFKDKDVSIFRAGRGLTKEIVEEISRMKEEPQWMLDFRLKSLDKFYE
CCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MPMPQWGGDLNDLDFDEITYYVKPSEKSEKSWDEVPDEIKATFDKLGIPEAEQKYLAGVS
CCCCCCCCCCCCCCHHHEEEEECCCCCCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCC
AQYESEVVYHNMKEDLEALGIVFKDTDSALKENEDIFREHFGKVIPPTDNKFSALNSAVW
CHHHHHHHHHHHHHHHHHHCEEEECCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
SGGSFIYVPKGVKVDTPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPVYTTNS
CCCCEEEECCCCEECCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCEEECCH
LHSAVVEIIIKKDAYCRYTTIQNWANNVYNLVTKRAVCEENATMEWIDGNLGSKLTMKYP
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECC
AVILKGEGARGLTLSIAIAGKGQHQDAGAKMIHLAPNTSSTIVSKSIAKHGGKVTYRGIV
EEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE
HFGPKAKNSRSNIECDTLIMDNQSTSDTIPYNEIKNDYVSLEHEAKVSKVSEEQLFYLMS
EECCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCC
>Mature Secondary Structure 
AKQLPDIGDYKYGFKDKDVSIFRAGRGLTKEIVEEISRMKEEPQWMLDFRLKSLDKFYE
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MPMPQWGGDLNDLDFDEITYYVKPSEKSEKSWDEVPDEIKATFDKLGIPEAEQKYLAGVS
CCCCCCCCCCCCCCHHHEEEEECCCCCCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCC
AQYESEVVYHNMKEDLEALGIVFKDTDSALKENEDIFREHFGKVIPPTDNKFSALNSAVW
CHHHHHHHHHHHHHHHHHHCEEEECCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
SGGSFIYVPKGVKVDTPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPVYTTNS
CCCCEEEECCCCEECCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCEEECCH
LHSAVVEIIIKKDAYCRYTTIQNWANNVYNLVTKRAVCEENATMEWIDGNLGSKLTMKYP
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECC
AVILKGEGARGLTLSIAIAGKGQHQDAGAKMIHLAPNTSSTIVSKSIAKHGGKVTYRGIV
EEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE
HFGPKAKNSRSNIECDTLIMDNQSTSDTIPYNEIKNDYVSLEHEAKVSKVSEEQLFYLMS
EECCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]