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The map label for this gene is sodC2 [H]

Identifier: 49187767

GI number: 49187767

Start: 4668699

End: 4669238

Strand: Reverse

Name: sodC2 [H]

Synonym: BAS4777

Alternate gene names: 49187767

Gene position: 4669238-4668699 (Counterclockwise)

Preceding gene: 49187768

Following gene: 49187765

Centisome position: 89.3

GC content: 40.56

Gene sequence:

>540_bases
ATGAAAAAACGGCTTTTTTTCAGTTGTTGTTTACTATTTCTGATGGCAGGTTGTGACCAAGGAAAGCCGAAAGAAATTGA
CGTGAAATTACATAATGCTTCAGGTGATGAAGTGGGGACTGCGAAAGTAACTCAGCAAACAAGCGGAGTGAAAATTACGA
TTAAAGGGGAAGGTTTCGCGCCAGGCCCGCACGGACTACATGTACACGAAATTGGAGAGTGTAAAGCACCTCGTTTTGAA
TCAGCTGGAAATCATTTTAATCCAGATGATAAAAAGCATGGACTACTTAATCCGAAGGGTGCAGAAAACGGTGATTTACC
GAACGTAATTGCAGACGGTTCTGGGAAAATTAAAGCAGAAATTGATGCACCGCATATAACGCTTGAAGAAGGAAAAACGA
CGATTCATAGAAAAGATGGAGCGTCTATTATTATTACGGAAAACGCTGATGATGGTATGACACAACCGACAGGTAAATCA
GGTGATCGAATTGCTTGTGGTGTCATTGTAAAAAAAGCGTCGGATATGAAGAAAAAGTAA

Upstream 100 bases:

>100_bases
AAGAAAAGCTGTTAGCTGAAAAGAAACAGTAACTCATTTTTGTATGTTTCCCTCTATGCTCGGACAATCTAAGGGCAGAA
TGTATTTTGGAGGGAATGAA

Downstream 100 bases:

>100_bases
AAGCTACCGTGCATGGTAGCTTTTTTGTGTAGTGTAAGTGAAAAGATATCAGCGATTATTGAGATATATCGGCGATTATT
GGAATATATCGACCGTAACT

Product: superoxide dismutase, Cu-Zn

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKKRLFFSCCLLFLMAGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFAPGPHGLHVHEIGECKAPRFE
SAGNHFNPDDKKHGLLNPKGAENGDLPNVIADGSGKIKAEIDAPHITLEEGKTTIHRKDGASIIITENADDGMTQPTGKS
GDRIACGVIVKKASDMKKK

Sequences:

>Translated_179_residues
MKKRLFFSCCLLFLMAGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFAPGPHGLHVHEIGECKAPRFE
SAGNHFNPDDKKHGLLNPKGAENGDLPNVIADGSGKIKAEIDAPHITLEEGKTTIHRKDGASIIITENADDGMTQPTGKS
GDRIACGVIVKKASDMKKK
>Mature_179_residues
MKKRLFFSCCLLFLMAGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFAPGPHGLHVHEIGECKAPRFE
SAGNHFNPDDKKHGLLNPKGAENGDLPNVIADGSGKIKAEIDAPHITLEEGKTTIHRKDGASIIITENADDGMTQPTGKS
GDRIACGVIVKKASDMKKK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=123, Percent_Identity=37.3983739837398, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI4507149, Length=128, Percent_Identity=39.84375, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787934, Length=179, Percent_Identity=30.1675977653631, Blast_Score=67, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71981876, Length=146, Percent_Identity=35.6164383561644, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71981879, Length=146, Percent_Identity=35.6164383561644, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17136496, Length=144, Percent_Identity=36.8055555555556, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI281363087, Length=125, Percent_Identity=37.6, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24652342, Length=125, Percent_Identity=37.6, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 19052; Mature: 19052

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRLFFSCCLLFLMAGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFA
CCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCC
PGPHGLHVHEIGECKAPRFESAGNHFNPDDKKHGLLNPKGAENGDLPNVIADGSGKIKAE
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEE
IDAPHITLEEGKTTIHRKDGASIIITENADDGMTQPTGKSGDRIACGVIVKKASDMKKK
ECCCEEEEECCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MKKRLFFSCCLLFLMAGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFA
CCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCC
PGPHGLHVHEIGECKAPRFESAGNHFNPDDKKHGLLNPKGAENGDLPNVIADGSGKIKAE
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEE
IDAPHITLEEGKTTIHRKDGASIIITENADDGMTQPTGKSGDRIACGVIVKKASDMKKK
ECCCEEEEECCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]