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The map label for this gene is racX [H]

Identifier: 49187641

GI number: 49187641

Start: 4544612

End: 4545286

Strand: Direct

Name: racX [H]

Synonym: BAS4650

Alternate gene names: 49187641

Gene position: 4544612-4545286 (Clockwise)

Preceding gene: 49187640

Following gene: 49187642

Centisome position: 86.92

GC content: 38.96

Gene sequence:

>675_bases
ATGATTGGAATACTAGCAGGAATGGGGCCAAAATCAACTGGACCATTCGTCGATACAGTTGTAGCAGAGTGCCAAACAAT
ATACGGAGCAAAGCATGACATGGACTTTCCTCATATGATGATCTATTCGTGCCCAACACCGTTTTACATGGATCGCCCTA
TTGATCATGAAGCGATGAAAAAAGCGATTATTGAAGGAGCACAAAAACTCGAGAGTACTGGCGCAGGCTTTATCGCTATG
TCGTGCAATACAGCGCATCTTTATTTTGAAGAATTACAGCAATCTCTTTCTATTCCTATTTTGAATATAGTTGATGAAAC
GTTAAAAGCGATTCCTGAAACTGCAAAAAGAGTCGCTCTTCTTGAAACCGAAGCAACTGTTCAAGCTGGTATTTACCAAG
ATGGGATTGCAAAGCGTAATATAGAGTACATTCATTACGAACAATGGCAGGAAAGCATTAATCAAATTATTACTTATATT
AAATCTGGAGAGGTTGAAGAAGCTCGCGAATTGTGGAGTGCCCTCGTTTTACAATTGAAAGATGAAGTTGATACTGCAAT
TATCGCATGTACTGATTTGAATGTAGTGGCGAGTGAGGATTTTGTTGATTCTGCTCAATGTCTTGCGAAAGCGGTTGTTA
GGATGTATCTATCAAATACAAAGAGATCTTCATAA

Upstream 100 bases:

>100_bases
CACAGCATGGGCTATCGTATATTCATTTTTATTATTTACCTTATTTCTTTTTATCGTTCGCAAAAAACGTTTTTAATTAC
ATATTAAAGGAGACGAAACA

Downstream 100 bases:

>100_bases
ACATAGAAAACATCACTCTTGAAATGTGTTTTTTGTTTGATAAAAATCCCCAAAACTTTTAACTTTCTTCACAATTCTTT
CAAAGTAATCACACTTAATC

Product: aspartate racemase family protein

Products: D-aspartate

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MIGILAGMGPKSTGPFVDTVVAECQTIYGAKHDMDFPHMMIYSCPTPFYMDRPIDHEAMKKAIIEGAQKLESTGAGFIAM
SCNTAHLYFEELQQSLSIPILNIVDETLKAIPETAKRVALLETEATVQAGIYQDGIAKRNIEYIHYEQWQESINQIITYI
KSGEVEEARELWSALVLQLKDEVDTAIIACTDLNVVASEDFVDSAQCLAKAVVRMYLSNTKRSS

Sequences:

>Translated_224_residues
MIGILAGMGPKSTGPFVDTVVAECQTIYGAKHDMDFPHMMIYSCPTPFYMDRPIDHEAMKKAIIEGAQKLESTGAGFIAM
SCNTAHLYFEELQQSLSIPILNIVDETLKAIPETAKRVALLETEATVQAGIYQDGIAKRNIEYIHYEQWQESINQIITYI
KSGEVEEARELWSALVLQLKDEVDTAIIACTDLNVVASEDFVDSAQCLAKAVVRMYLSNTKRSS
>Mature_224_residues
MIGILAGMGPKSTGPFVDTVVAECQTIYGAKHDMDFPHMMIYSCPTPFYMDRPIDHEAMKKAIIEGAQKLESTGAGFIAM
SCNTAHLYFEELQQSLSIPILNIVDETLKAIPETAKRVALLETEATVQAGIYQDGIAKRNIEYIHYEQWQESINQIITYI
KSGEVEEARELWSALVLQLKDEVDTAIIACTDLNVVASEDFVDSAQCLAKAVVRMYLSNTKRSS

Specific function: Probable aspartate or glutamate racemase involved in peptidoglycan modification during cortex synthesis [H]

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: 5.1.1.13

Molecular weight: Translated: 24890; Mature: 24890

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS00923 ASP_GLU_RACEMASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGILAGMGPKSTGPFVDTVVAECQTIYGAKHDMDFPHMMIYSCPTPFYMDRPIDHEAMK
CEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHH
KAIIEGAQKLESTGAGFIAMSCNTAHLYFEELQQSLSIPILNIVDETLKAIPETAKRVAL
HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LETEATVQAGIYQDGIAKRNIEYIHYEQWQESINQIITYIKSGEVEEARELWSALVLQLK
HHHHHHHHHHHHHCCHHHCCCHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DEVDTAIIACTDLNVVASEDFVDSAQCLAKAVVRMYLSNTKRSS
HHHHHEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIGILAGMGPKSTGPFVDTVVAECQTIYGAKHDMDFPHMMIYSCPTPFYMDRPIDHEAMK
CEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHH
KAIIEGAQKLESTGAGFIAMSCNTAHLYFEELQQSLSIPILNIVDETLKAIPETAKRVAL
HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LETEATVQAGIYQDGIAKRNIEYIHYEQWQESINQIITYIKSGEVEEARELWSALVLQLK
HHHHHHHHHHHHHCCHHHCCCHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DEVDTAIIACTDLNVVASEDFVDSAQCLAKAVVRMYLSNTKRSS
HHHHHEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate

Specific reaction: L-aspartate = D-aspartate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8491712; 9384377 [H]