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The map label for this gene is yfkR [H]

Identifier: 49187624

GI number: 49187624

Start: 4526543

End: 4527622

Strand: Direct

Name: yfkR [H]

Synonym: BAS4632

Alternate gene names: 49187624

Gene position: 4526543-4527622 (Clockwise)

Preceding gene: 49187623

Following gene: 49187625

Centisome position: 86.57

GC content: 31.48

Gene sequence:

>1080_bases
ATGGAAAAAATCAAAAGCAAATTAATACTTATTTCTTGTATAGCTCTTTTTAGTTTAACTGGATGTTTACAAAAAAATAT
TATCGATGATGTACAACTGATTCAAGGAACCGTTTTTGATACAGCAAAGGATAATAAAGTAAAAGTAACATTCGTTTGTC
CCATTCAGAAAAAAGGAAATAAAGTTCAAGTTTTTGAAGGAACTGCAAATGCGGTAAAACAAGTAAAAGCAGACACATCG
TTAGAATCTTCTCAACCTTTTGCTAGTGGGCAAATGCGTGTCGCTTTATATACGATAAGACTTGCAAAAAAAGGAATGTC
TACTTCATTCGATACATTACTTCGAGATGTGAATATAGGGAACGCTTTATATGCAGCTTTATTAGATGGGAATGGTACTG
AACTTTTAAAAGGCAAATATTCGACTTCATACAACGTTGCAATTTATATAAAAAAATTGCTAGAACATAATATGGAGACC
GGACCTTTACCAGCGGATAATCTACATATAGGAGCATTTCGCTATTATCAAGAGGGGCAAGACTACTATATTCCAATTTT
AAAAAAACATGGGGATAAAATAAAAATTACCGGTATTGGTCTTTTTAAAAAGGACAAATATATCGGTAAAATTGCGGAAA
AAGATATGTTCATCTTTAAAGGACTATTAGAGAAACATAAATTAGATTCACATGAATTTAAAACAGATTCTGCGTACGTA
ATGATTAATAATATTCGTTCTGTTCCAACTTACGATATAAAAATTAAAAACGGGAAGCCTTCCTTTTTCATTCACGTCCG
TCTTGATGCACGTATTCAAGAACTATCAAAACAAATTAACTTAGAAAATAACAAGAACACAAAAAACATTGAAAAAGATG
TCCAAAAACAATTAGATAAACAAGCTGCTAAGTTAATTAAGCACCTTAAATCTTTAGGCGTCGATCCTCTTGGGCTAGGA
GCTAAATATAAACAACATTATCGCCCATTCAAATTAGAAGAATGGAGACAATTGTACAAAGATGTTCCAGTTACTATAAA
ATACACCGTAAATATTACAAATTCTGGTGTGATTGAATGA

Upstream 100 bases:

>100_bases
AAGATATTAATAACTTTATTAGTAATGCATCGAAAGTTAGTTTTTGGCTCATTTACGTATACATCCCAATCCTATTTATT
ATTGTGTGGGTGAAAAGAAA

Downstream 100 bases:

>100_bases
GAAATGATTGAACTCCTCTCCCCGGCATGATACAACGGAAAGAGGAGTTTTTATTTTAGATAGAGAGAGAAGATATTTAT
GGGGGAGCTTATGTCTAAAA

Product: spore germination protein GerHC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MEKIKSKLILISCIALFSLTGCLQKNIIDDVQLIQGTVFDTAKDNKVKVTFVCPIQKKGNKVQVFEGTANAVKQVKADTS
LESSQPFASGQMRVALYTIRLAKKGMSTSFDTLLRDVNIGNALYAALLDGNGTELLKGKYSTSYNVAIYIKKLLEHNMET
GPLPADNLHIGAFRYYQEGQDYYIPILKKHGDKIKITGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSAYV
MINNIRSVPTYDIKIKNGKPSFFIHVRLDARIQELSKQINLENNKNTKNIEKDVQKQLDKQAAKLIKHLKSLGVDPLGLG
AKYKQHYRPFKLEEWRQLYKDVPVTIKYTVNITNSGVIE

Sequences:

>Translated_359_residues
MEKIKSKLILISCIALFSLTGCLQKNIIDDVQLIQGTVFDTAKDNKVKVTFVCPIQKKGNKVQVFEGTANAVKQVKADTS
LESSQPFASGQMRVALYTIRLAKKGMSTSFDTLLRDVNIGNALYAALLDGNGTELLKGKYSTSYNVAIYIKKLLEHNMET
GPLPADNLHIGAFRYYQEGQDYYIPILKKHGDKIKITGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSAYV
MINNIRSVPTYDIKIKNGKPSFFIHVRLDARIQELSKQINLENNKNTKNIEKDVQKQLDKQAAKLIKHLKSLGVDPLGLG
AKYKQHYRPFKLEEWRQLYKDVPVTIKYTVNITNSGVIE
>Mature_359_residues
MEKIKSKLILISCIALFSLTGCLQKNIIDDVQLIQGTVFDTAKDNKVKVTFVCPIQKKGNKVQVFEGTANAVKQVKADTS
LESSQPFASGQMRVALYTIRLAKKGMSTSFDTLLRDVNIGNALYAALLDGNGTELLKGKYSTSYNVAIYIKKLLEHNMET
GPLPADNLHIGAFRYYQEGQDYYIPILKKHGDKIKITGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSAYV
MINNIRSVPTYDIKIKNGKPSFFIHVRLDARIQELSKQINLENNKNTKNIEKDVQKQLDKQAAKLIKHLKSLGVDPLGLG
AKYKQHYRPFKLEEWRQLYKDVPVTIKYTVNITNSGVIE

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 40654; Mature: 40654

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIKSKLILISCIALFSLTGCLQKNIIDDVQLIQGTVFDTAKDNKVKVTFVCPIQKKGN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEEECCCCCC
KVQVFEGTANAVKQVKADTSLESSQPFASGQMRVALYTIRLAKKGMSTSFDTLLRDVNIG
EEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCHHHHHHHCCCC
NALYAALLDGNGTELLKGKYSTSYNVAIYIKKLLEHNMETGPLPADNLHIGAFRYYQEGQ
CEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCC
DYYIPILKKHGDKIKITGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSAYV
CEEEEEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
MINNIRSVPTYDIKIKNGKPSFFIHVRLDARIQELSKQINLENNKNTKNIEKDVQKQLDK
EEECCCCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QAAKLIKHLKSLGVDPLGLGAKYKQHYRPFKLEEWRQLYKDVPVTIKYTVNITNSGVIE
HHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure
MEKIKSKLILISCIALFSLTGCLQKNIIDDVQLIQGTVFDTAKDNKVKVTFVCPIQKKGN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEEECCCCCC
KVQVFEGTANAVKQVKADTSLESSQPFASGQMRVALYTIRLAKKGMSTSFDTLLRDVNIG
EEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCHHHHHHHCCCC
NALYAALLDGNGTELLKGKYSTSYNVAIYIKKLLEHNMETGPLPADNLHIGAFRYYQEGQ
CEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCC
DYYIPILKKHGDKIKITGIGLFKKDKYIGKIAEKDMFIFKGLLEKHKLDSHEFKTDSAYV
CEEEEEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
MINNIRSVPTYDIKIKNGKPSFFIHVRLDARIQELSKQINLENNKNTKNIEKDVQKQLDK
EEECCCCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QAAKLIKHLKSLGVDPLGLGAKYKQHYRPFKLEEWRQLYKDVPVTIKYTVNITNSGVIE
HHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]