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The map label for this gene is sigW [H]

Identifier: 49187552

GI number: 49187552

Start: 4463429

End: 4463974

Strand: Reverse

Name: sigW [H]

Synonym: BAS4558

Alternate gene names: 49187552

Gene position: 4463974-4463429 (Counterclockwise)

Preceding gene: 49187553

Following gene: 49187551

Centisome position: 85.38

GC content: 37.36

Gene sequence:

>546_bases
ATGGCGCAGATTGGGATTGAGGAGGAGCTCATGCTTGCGTATCAAAGTGGAGATAAGCAGGCTGGGGAAAAACTATATGT
TTTAATCAAACCAGCGCTATACACATTTTTATATCGATTTAACCGAGATGAACAATTGAGTATCGACCTTGTCCAAGATA
CGTTTTTGACGCTAGAGCGTAAGAAACATATGTATGAACCTGAAAAGGGAAAAATAAAAACGTATTTATTTCAAATTGGT
TATCGTCTTATGATTAATAAATTAAATAGGAGAAAAAAGTGGCGTACGCTTTTGCCGTTTTTAGTGCCGATTCAGGAAAA
AGAATTTTCTCACGAAGATCGGCTCACAGTAAGAGAAGCAATTTTGAAAGTTCCAGAAGAGCAAAGAGCAGTCCTAATCC
TTTCTTATTATCATGACATGCAGCAAAAAGAAATTGCAGAGGTATTAGATATTCCAGTCGGAACGGTGAAGTTGAGACTT
CATAACGGGATAAAGAAATTGAAACAATTGCTGGAGGTGGACGAAATTGAGCGAAAATCCCTTTAA

Upstream 100 bases:

>100_bases
TTTTTTACGAATCAATCACAAGTATGGATTATTGTCGCAAGTTGCTATTTAATTTCCCGCATTTCGTTAACGTTAAAAGG
TATCAAGGAGATCAAAAATC

Downstream 100 bases:

>100_bases
GAGTGAATATAAATTAAAACAGCATTTAGATAGTGACCATGTAGAAGTACCGGACTTTCCAAAAACGGTAAGTCGATTCG
ATCGATTAATCGGGTTTCTT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MAQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYEPEKGKIKTYLFQIG
YRLMINKLNRRKKWRTLLPFLVPIQEKEFSHEDRLTVREAILKVPEEQRAVLILSYYHDMQQKEIAEVLDIPVGTVKLRL
HNGIKKLKQLLEVDEIERKSL

Sequences:

>Translated_181_residues
MAQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYEPEKGKIKTYLFQIG
YRLMINKLNRRKKWRTLLPFLVPIQEKEFSHEDRLTVREAILKVPEEQRAVLILSYYHDMQQKEIAEVLDIPVGTVKLRL
HNGIKKLKQLLEVDEIERKSL
>Mature_180_residues
AQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYEPEKGKIKTYLFQIGY
RLMINKLNRRKKWRTLLPFLVPIQEKEFSHEDRLTVREAILKVPEEQRAVLILSYYHDMQQKEIAEVLDIPVGTVKLRLH
NGIKKLKQLLEVDEIERKSL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21564; Mature: 21433

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLER
CCCCCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHH
KKHMYEPEKGKIKTYLFQIGYRLMINKLNRRKKWRTLLPFLVPIQEKEFSHEDRLTVREA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHH
ILKVPEEQRAVLILSYYHDMQQKEIAEVLDIPVGTVKLRLHNGIKKLKQLLEVDEIERKS
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
L
C
>Mature Secondary Structure 
AQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLER
CCCCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHH
KKHMYEPEKGKIKTYLFQIGYRLMINKLNRRKKWRTLLPFLVPIQEKEFSHEDRLTVREA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHH
ILKVPEEQRAVLILSYYHDMQQKEIAEVLDIPVGTVKLRLHNGIKKLKQLLEVDEIERKS
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]