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The map label for this gene is ybeY [C]

Identifier: 49187198

GI number: 49187198

Start: 4116978

End: 4117448

Strand: Reverse

Name: ybeY [C]

Synonym: BAS4202

Alternate gene names: 49187198

Gene position: 4117448-4116978 (Counterclockwise)

Preceding gene: 49187199

Following gene: 49187197

Centisome position: 78.75

GC content: 35.88

Gene sequence:

>471_bases
ATGAGTTTATTAATTGATTTTATTGATGAAACAGAAGAAGTGAAAGAAGAATATGTGAATTTAATTCGTGAAATATTAGG
AAAAGCAGCTCAAATGGAAAAAATAGAGGATGGTGCGGAGTTATCAGTGACATTTGTAGATAACGAACGCATTCGCGAGA
TTAATCGTGATTACCGAGATAAGGATCAGCCTACTGATGTCATTTCTTTTGCTATGGAAGAAATGGGAGAAGGAGAAATG
GAAATTGTAGGTGTAGAGATGCCACGTATGTTAGGTGACCTTATTATTTCTATTCCGAGAGCGAAAGAACAAGCTGAAGA
GTATGGACATTCTTTTGATCGTGAACTTGGCTTTCTAGCGTTACATGGCTTTTTACATTTACTTGGTTATGACCACATGA
CAGAAGAGGATGAAAAAGAAATGTTTGGAAGACAAAAAGAAATTTTAGAAGCATTTGGATTAGGGCGATGA

Upstream 100 bases:

>100_bases
AGGAACTACAAATCGTTGGAAAAACGTTATGTGAAACGTTAAATGGTATTTTCCATTCGCGTATTACATATCCGGAGCCA
CCGGAAGAGAAGGAGAAAGA

Downstream 100 bases:

>100_bases
AAAAAGGAAAACTTATAGATAGTTTTGGATATGCTATAGTTGGTATATTCTTTTGTCTTCGTCATGAACGAAATATGAAA
ATTCATTATTTAGCCGCAGT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSLLIDFIDETEEVKEEYVNLIREILGKAAQMEKIEDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEM
EIVGVEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLGR

Sequences:

>Translated_156_residues
MSLLIDFIDETEEVKEEYVNLIREILGKAAQMEKIEDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEM
EIVGVEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLGR
>Mature_155_residues
SLLIDFIDETEEVKEEYVNLIREILGKAAQMEKIEDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEME
IVGVEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLGR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=158, Percent_Identity=31.6455696202532, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1786880, Length=124, Percent_Identity=33.8709677419355, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BACAA (C3P8K9)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868592.1
- ProteinModelPortal:   C3P8K9
- SMR:   C3P8K9
- EnsemblBacteria:   EBBACT00000126163
- GeneID:   7853124
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4547
- GeneTree:   EBGT00050000002084
- ProtClustDB:   PRK00016
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18063; Mature: 17932

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLIDFIDETEEVKEEYVNLIREILGKAAQMEKIEDGAELSVTFVDNERIREINRDYRD
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCC
KDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLA
CCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLGR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLLIDFIDETEEVKEEYVNLIREILGKAAQMEKIEDGAELSVTFVDNERIREINRDYRD
CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCC
KDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLA
CCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLGR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA