Click here to switch to the map view.

The map label for this gene is ytrA [H]

Identifier: 49187123

GI number: 49187123

Start: 4047271

End: 4047645

Strand: Reverse

Name: ytrA [H]

Synonym: BAS4126

Alternate gene names: 49187123

Gene position: 4047645-4047271 (Counterclockwise)

Preceding gene: 49187124

Following gene: 49187122

Centisome position: 77.41

GC content: 36.8

Gene sequence:

>375_bases
ATGAATATTATTATTTCGAATTCTTCCCAAGACCCTATTTATGTGCAAATAAGAAAACAATTAAGCCAGCTTATTTTAAA
TGGTGGTTTAAAGGGTGGAGACCAATTACCGTCTATTCGCAATTTAGCGAAGGAATTGCAAATTAGTGTAATTACAACGA
AGCGTGCGTACGAGGAGCTTGAAAAAGAAGGATATATAGAAACTGTCGCTGGGAAGGGGACTTATGTTTCACGTAAAAAT
AATGAACTATTAAAAGAACAGCGGCTTCGCCTATTGGAAAGTAAAGCGGAAGAGATTGTGAATGAAAGTAAAGCGTTGCA
GCTTTCACTTGAAGATTTACAGCAGATGATAGCGTGTTTATATGAGGGGGAATAA

Upstream 100 bases:

>100_bases
CAACAGGAAAATGTTGGTCTTTTTTTCTTGCCAAAAATAGGATGTTGTGTATATACTGTATATATAAGGTATACACAGTA
TATACACACTGGAGGAAAAC

Downstream 100 bases:

>100_bases
AGGATGTTAGAGCTAAAAAACGTTTGTAAAAGTTATGAAGATTTTGCAGTGAAAAATATAAGTTTTACGTTACCACGCGG
ATATATTATGGGATTTGTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRNLAKELQISVITTKRAYEELEKEGYIETVAGKGTYVSRKN
NELLKEQRLRLLESKAEEIVNESKALQLSLEDLQQMIACLYEGE

Sequences:

>Translated_124_residues
MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRNLAKELQISVITTKRAYEELEKEGYIETVAGKGTYVSRKN
NELLKEQRLRLLESKAEEIVNESKALQLSLEDLQQMIACLYEGE
>Mature_124_residues
MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRNLAKELQISVITTKRAYEELEKEGYIETVAGKGTYVSRKN
NELLKEQRLRLLESKAEEIVNESKALQLSLEDLQQMIACLYEGE

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14023; Mature: 14023

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRNLAKELQISVITTKRAYEEL
CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EKEGYIETVAGKGTYVSRKNNELLKEQRLRLLESKAEEIVNESKALQLSLEDLQQMIACL
HHCCCEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHH
YEGE
HCCC
>Mature Secondary Structure
MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRNLAKELQISVITTKRAYEEL
CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EKEGYIETVAGKGTYVSRKNNELLKEQRLRLLESKAEEIVNESKALQLSLEDLQQMIACL
HHCCCEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHH
YEGE
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]