Click here to switch to the map view.

The map label for this gene is ydcN [C]

Identifier: 49185259

GI number: 49185259

Start: 2251164

End: 2251724

Strand: Direct

Name: ydcN [C]

Synonym: BAS2250

Alternate gene names: 49185259

Gene position: 2251164-2251724 (Clockwise)

Preceding gene: 49185257

Following gene: 49185260

Centisome position: 43.05

GC content: 32.26

Gene sequence:

>561_bases
ATGATACATGATAGGCTTGGACAAACTGTATTAAGTTATCGTAAGAAAAATAAGATGACAATTCGCGAATTTGCGGATTA
TGCAGGAATTAGTACTTCATTAATTAGTCAAATTGAAAGAGGACATGCGAATCCCTCGTTAAGTGTATTGGAATTAATAG
CGAAAGCGTTAAATGTACCGCTATTTACACTGTTTATTAATGAGATTGATACAGATTCACTCATTTCTAAGAAGAAAGAT
AGAAAGAAAGTATATCGAGAAAATAGCGATCATATCGTATACGATGTATTAACACCTGATTTTATGAAAGCGCGTATTGA
AATGTTAATGATGGACCTAAATAAACAAGCAAATACAACGGAAAATCACTATTCACATGAAGATAAAGAAGAAATTGCTG
TTGTTATGAAAGGGGAAGTTTATGTCGAATTAGAAGGCAAAGAGTATTTCTTAGAAGAAGGAGATGTTGTACGTATCCCA
CCAAATGTGAAACATCGTTTTTTGAATAAAAGTGATGAATCCAATCATATTTTATTTGTATTGACGCCATCTTTAGGATG
A

Upstream 100 bases:

>100_bases
AAGTCTCGGAGACGATAGAAAAGGATTATTTGCTTTTGTTTAGTAAGTCAGCACAAAAGCGATAAAATATATATTATGAT
GGACGAAGGAAGGATTTACT

Downstream 100 bases:

>100_bases
GTATAAAGTGATTTTTTTACGGGGGATAGAAAGGTGGAAAATAAAACTCTTTTAAAAGGTGGCCTGTCAATTATTTCTCA
ATGTAAAAAAGAAACAAATG

Product: DNA-binding protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cupin 2 Conserved Barrel Domain Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain-Containing Protein; Double-Stranded Beta-Helix-Like Protein; Cupin Domain Protein; HTH-Type Transcriptional Regulator YdcN; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Cro/CI Family

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MIHDRLGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLFINEIDTDSLISKKKD
RKKVYRENSDHIVYDVLTPDFMKARIEMLMMDLNKQANTTENHYSHEDKEEIAVVMKGEVYVELEGKEYFLEEGDVVRIP
PNVKHRFLNKSDESNHILFVLTPSLG

Sequences:

>Translated_186_residues
MIHDRLGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLFINEIDTDSLISKKKD
RKKVYRENSDHIVYDVLTPDFMKARIEMLMMDLNKQANTTENHYSHEDKEEIAVVMKGEVYVELEGKEYFLEEGDVVRIP
PNVKHRFLNKSDESNHILFVLTPSLG
>Mature_186_residues
MIHDRLGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLFINEIDTDSLISKKKD
RKKVYRENSDHIVYDVLTPDFMKARIEMLMMDLNKQANTTENHYSHEDKEEIAVVMKGEVYVELEGKEYFLEEGDVVRIP
PNVKHRFLNKSDESNHILFVLTPSLG

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21456; Mature: 21456

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHDRLGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVP
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
LFTLFINEIDTDSLISKKKDRKKVYRENSDHIVYDVLTPDFMKARIEMLMMDLNKQANTT
EEEEEHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC
ENHYSHEDKEEIAVVMKGEVYVELEGKEYFLEEGDVVRIPPNVKHRFLNKSDESNHILFV
CCCCCCCCHHHEEEEEECEEEEEECCCEEEECCCCEEECCCCHHHHHCCCCCCCCEEEEE
LTPSLG
EECCCC
>Mature Secondary Structure
MIHDRLGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVP
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
LFTLFINEIDTDSLISKKKDRKKVYRENSDHIVYDVLTPDFMKARIEMLMMDLNKQANTT
EEEEEHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC
ENHYSHEDKEEIAVVMKGEVYVELEGKEYFLEEGDVVRIPPNVKHRFLNKSDESNHILFV
CCCCCCCCHHHEEEEEECEEEEEECCCEEEECCCCEEECCCCHHHHHCCCCCCCCEEEEE
LTPSLG
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA