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The map label for this gene is ypgR [H]

Identifier: 49185028

GI number: 49185028

Start: 2021434

End: 2022561

Strand: Direct

Name: ypgR [H]

Synonym: BAS2017

Alternate gene names: 49185028

Gene position: 2021434-2022561 (Clockwise)

Preceding gene: 49185024

Following gene: 49185029

Centisome position: 38.66

GC content: 38.21

Gene sequence:

>1128_bases
GTGAAGATTAAAGCAATTGAACCGACGCCAAGTCCAAATACAATGAAAGTTATTTTGAATGAAGTATTACCATCAGGAGC
ACGTAATAATTATACAAATGAAAATAAAGAACAAGCACCAATGCAAGTACAAGAAATTTTGAAAATTGAAGGCATTAAAG
GTGTATATCATGTAGCCGACTTTTTAGCAGTGGAGCGAAATGCGAAGTATGACTGGAAAGTTTTATTACAACAAGTTCGT
GCTGTTTTCGGTGAAGAAGTAGTAGAAGAAAGTGAAGAACAACAACTTGCTCATTTTGGGGAAGTGAAAGTGTTTGTTCA
AATGTTCTTTACAATTCCAATGCAAGTAAAGTTAACAGATGGGACGACAGAAGAACGTGTTGGTTTACCAGATCGTTTTA
AAGAATCAATTATGAAAGTGCAAATGTCTGCACCAAACGTTGTAAAAGAGCGTAAATGGGTGGAACAAAGTACACGTTAC
GGTAACTTTGAAGAAATTGGGAAAGAAGTAGTAGAAGAGATTGTTGCTGCTTATTCAGAAGAACGTGTAAATGAAACGGT
CAAAGAATTATTAAATCAGGCAGGTGCTGTTGAAGTAACGATTCAAAAGCGTGAGCCATATAAAGTAACAGAAGAGATGA
TGAAGGATGCTGACTGGAAAAAACGTTTCGCAGCATTAGAACAAATGGATCCTACTGAAGAAGATATTCCAGTGTTGAAG
ATGGCGTTAGATGATGAAAAAGTTTCGATTCGCCGTTTAGCAACAGCGTATTTAGGTATGGTAAAAGGTGATGAAGTATT
GCCGTTATTATATAAAGCGCTATTAGATCGTTCAGTAAGTGTTCGCCGTACAGCGGGCGATTGTTTATCAGATGTAGGTG
ATCCGGCAGCGATGTTTGTTATGATTAAATCTCTGAAAGATTCAAGTAAATTAGTACGCTGGCGTGCAGCAATGTTCTTA
TTTGAACTTGGAGATGAAAGTGCGATTCCAGCATTAAAAGCAGCGCAAGATGATCCAGAGTTTGAAGTAGCGATGCAAGC
TCGTCTAGCATTAGAGCGTATTGAAGGCGGCGAAGAAGCAAAAGGTTCTGTATGGAAACAAATGACGGAGTCTCGTAAAG
GGGAATAA

Upstream 100 bases:

>100_bases
GTAGAAAAGTAAAGAGTAAAATTAAGCATTCGAGTAGGAGTATAGCGTGATAACATGTTACAATACAGCTAAGAACATGC
AATAAAGGAGAGTTTTTTAC

Downstream 100 bases:

>100_bases
TGTATGATTGTTTTCTATGATAGTTGGTGTCCGATGTGTACGGCGGTTGCAGATCGTACGAAAAAATTAGATAAAAAAGG
TAAGGTGAAATTTGTTTCAT

Product: HEAT repeat-containing PBS lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MKIKAIEPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVERNAKYDWKVLLQQVR
AVFGEEVVEESEEQQLAHFGEVKVFVQMFFTIPMQVKLTDGTTEERVGLPDRFKESIMKVQMSAPNVVKERKWVEQSTRY
GNFEEIGKEVVEEIVAAYSEERVNETVKELLNQAGAVEVTIQKREPYKVTEEMMKDADWKKRFAALEQMDPTEEDIPVLK
MALDDEKVSIRRLATAYLGMVKGDEVLPLLYKALLDRSVSVRRTAGDCLSDVGDPAAMFVMIKSLKDSSKLVRWRAAMFL
FELGDESAIPALKAAQDDPEFEVAMQARLALERIEGGEEAKGSVWKQMTESRKGE

Sequences:

>Translated_375_residues
MKIKAIEPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVERNAKYDWKVLLQQVR
AVFGEEVVEESEEQQLAHFGEVKVFVQMFFTIPMQVKLTDGTTEERVGLPDRFKESIMKVQMSAPNVVKERKWVEQSTRY
GNFEEIGKEVVEEIVAAYSEERVNETVKELLNQAGAVEVTIQKREPYKVTEEMMKDADWKKRFAALEQMDPTEEDIPVLK
MALDDEKVSIRRLATAYLGMVKGDEVLPLLYKALLDRSVSVRRTAGDCLSDVGDPAAMFVMIKSLKDSSKLVRWRAAMFL
FELGDESAIPALKAAQDDPEFEVAMQARLALERIEGGEEAKGSVWKQMTESRKGE
>Mature_375_residues
MKIKAIEPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVERNAKYDWKVLLQQVR
AVFGEEVVEESEEQQLAHFGEVKVFVQMFFTIPMQVKLTDGTTEERVGLPDRFKESIMKVQMSAPNVVKERKWVEQSTRY
GNFEEIGKEVVEEIVAAYSEERVNETVKELLNQAGAVEVTIQKREPYKVTEEMMKDADWKKRFAALEQMDPTEEDIPVLK
MALDDEKVSIRRLATAYLGMVKGDEVLPLLYKALLDRSVSVRRTAGDCLSDVGDPAAMFVMIKSLKDSSKLVRWRAAMFL
FELGDESAIPALKAAQDDPEFEVAMQARLALERIEGGEEAKGSVWKQMTESRKGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR014824
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS; PF08712 Nfu_N [H]

EC number: NA

Molecular weight: Translated: 42531; Mature: 42531

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKAIEPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVAD
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHHHHHHHCCCCHHHHHHH
FLAVERNAKYDWKVLLQQVRAVFGEEVVEESEEQQLAHFGEVKVFVQMFFTIPMQVKLTD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC
GTTEERVGLPDRFKESIMKVQMSAPNVVKERKWVEQSTRYGNFEEIGKEVVEEIVAAYSE
CCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ERVNETVKELLNQAGAVEVTIQKREPYKVTEEMMKDADWKKRFAALEQMDPTEEDIPVLK
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHH
MALDDEKVSIRRLATAYLGMVKGDEVLPLLYKALLDRSVSVRRTAGDCLSDVGDPAAMFV
HHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH
MIKSLKDSSKLVRWRAAMFLFELGDESAIPALKAAQDDPEFEVAMQARLALERIEGGEEA
HHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCH
KGSVWKQMTESRKGE
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIKAIEPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVAD
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHHHHHHHCCCCHHHHHHH
FLAVERNAKYDWKVLLQQVRAVFGEEVVEESEEQQLAHFGEVKVFVQMFFTIPMQVKLTD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC
GTTEERVGLPDRFKESIMKVQMSAPNVVKERKWVEQSTRYGNFEEIGKEVVEEIVAAYSE
CCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ERVNETVKELLNQAGAVEVTIQKREPYKVTEEMMKDADWKKRFAALEQMDPTEEDIPVLK
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHH
MALDDEKVSIRRLATAYLGMVKGDEVLPLLYKALLDRSVSVRRTAGDCLSDVGDPAAMFV
HHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH
MIKSLKDSSKLVRWRAAMFLFELGDESAIPALKAAQDDPEFEVAMQARLALERIEGGEEA
HHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCH
KGSVWKQMTESRKGE
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]