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The map label for this gene is scdA [H]

Identifier: 49185009

GI number: 49185009

Start: 2004873

End: 2005580

Strand: Reverse

Name: scdA [H]

Synonym: BAS1998

Alternate gene names: 49185009

Gene position: 2005580-2004873 (Counterclockwise)

Preceding gene: 49185011

Following gene: 49185008

Centisome position: 38.36

GC content: 32.06

Gene sequence:

>708_bases
ATGGAACATACATTTACTGAAACTTCTATTGTCGGTGAGATTGTTACACAATTTCCAAAAGCTAGTGATCTTTTTAAATC
CTATAGAATAGATTTTTGTTGTGGCGGTAATAAGCCACTTATTGATGCAATTCATGAAAGAAATTTATCAGCTACTGAAG
TAATTACAGAGTTAAATACGCTTTATCATAATACGAAACGATTAAATGAATCTGAAATTGATTGGAAAAATGCTTCTTAT
CGTGAATTGATTGATTATGTGATTCATAAGCATCATCGTTATTTAAATGAAGAGTTACCACAGTTAAGTCCTTATGTGAC
GAAAGTATTACGTGTTCATGGAGCAAATCAGCCGCATTTAGCTAAAATTCATAAGCTATTTCATGAACTTAAAATGGAAT
TAGAACAGCATTTAATTAAAGAAGAAACAGAAGATTTCCCATTAATTTTAGAATTTGAAAAAAATCCAACTGATGAAAAC
TATGCAAAGTTACGTAAAGTAGTAGATGAACTAGAAAATGAACATAACCACGCTGGCAACATTATTAAAGAGCTTCGTAA
AGTTACAAATGACTTTACTCCCCCAGAAGGAGCTTGCGGCACTTATCGACTTGTTTACAATCGCCTTGAAGCGTTAGAGT
CTGATTTATTTGAGCACATTCATTTAGAAAATAATATTTTATTTCCACGTGCCATTACGAGAGCGTAA

Upstream 100 bases:

>100_bases
AAAACTGACACATAATAAGTGATTTCAATCACCACATTGTTTTTCATTTATGACTATTCTTAATTTAGATATTACATTTA
AACTTTATGGAGGCATTCAT

Downstream 100 bases:

>100_bases
ATAAAGTGCAGGACATAAGTATACATACTGATGTCCTGCTTTTTCATTTCACAAAAAATATACATATCCTCCCTCACACA
AATCCGAATTTTAACAATTT

Product: ScdA protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVITELNTLYHNTKRLNESEIDWKNASY
RELIDYVIHKHHRYLNEELPQLSPYVTKVLRVHGANQPHLAKIHKLFHELKMELEQHLIKEETEDFPLILEFEKNPTDEN
YAKLRKVVDELENEHNHAGNIIKELRKVTNDFTPPEGACGTYRLVYNRLEALESDLFEHIHLENNILFPRAITRA

Sequences:

>Translated_235_residues
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVITELNTLYHNTKRLNESEIDWKNASY
RELIDYVIHKHHRYLNEELPQLSPYVTKVLRVHGANQPHLAKIHKLFHELKMELEQHLIKEETEDFPLILEFEKNPTDEN
YAKLRKVVDELENEHNHAGNIIKELRKVTNDFTPPEGACGTYRLVYNRLEALESDLFEHIHLENNILFPRAITRA
>Mature_235_residues
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVITELNTLYHNTKRLNESEIDWKNASY
RELIDYVIHKHHRYLNEELPQLSPYVTKVLRVHGANQPHLAKIHKLFHELKMELEQHLIKEETEDFPLILEFEKNPTDEN
YAKLRKVVDELENEHNHAGNIIKELRKVTNDFTPPEGACGTYRLVYNRLEALESDLFEHIHLENNILFPRAITRA

Specific function: Involved in peptidoglycan cross-linking. Required for normal cell growth and development [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scdA family [H]

Homologues:

Organism=Escherichia coli, GI1790654, Length=224, Percent_Identity=36.1607142857143, Blast_Score=144, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 27553; Mature: 27553

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVITELNT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHH
LYHNTKRLNESEIDWKNASYRELIDYVIHKHHRYLNEELPQLSPYVTKVLRVHGANQPHL
HHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHH
AKIHKLFHELKMELEQHLIKEETEDFPLILEFEKNPTDENYAKLRKVVDELENEHNHAGN
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHH
IIKELRKVTNDFTPPEGACGTYRLVYNRLEALESDLFEHIHLENNILFPRAITRA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHCC
>Mature Secondary Structure
MEHTFTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVITELNT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHH
LYHNTKRLNESEIDWKNASYRELIDYVIHKHHRYLNEELPQLSPYVTKVLRVHGANQPHL
HHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHH
AKIHKLFHELKMELEQHLIKEETEDFPLILEFEKNPTDENYAKLRKVVDELENEHNHAGN
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHH
IIKELRKVTNDFTPPEGACGTYRLVYNRLEALESDLFEHIHLENNILFPRAITRA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA