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The map label for this gene is pdp [H]

Identifier: 49184768

GI number: 49184768

Start: 1778928

End: 1780229

Strand: Direct

Name: pdp [H]

Synonym: BAS1756

Alternate gene names: 49184768

Gene position: 1778928-1780229 (Clockwise)

Preceding gene: 49184767

Following gene: 49184769

Centisome position: 34.02

GC content: 36.79

Gene sequence:

>1302_bases
ATGAGAATGGTAGATATTATTGCAAAAAAACGTGACGGTAAAGAATTAACAACTGAAGAAATCAAATTCTTTATTAATGG
TTATACAGACGGAAGTATTCCTGATTATCAAGTAAGTGCACTTGCAATGGCAATCTTCTTTAAAGATATGACAGATCGTG
AACGTGCAGATTTAACGATGGCAATGGTGGAGTCTGGAGAAACAATCGACTTATCTGCAATTGAAGGAATTAAAGTAGAC
AAACATTCAACTGGTGGTGTTGGTGATACAACAACATTAGTATTAGGACCATTAGTAGCTGCTTTAGATGTACCAGTAGC
AAAAATGTCTGGTCGTGGTTTAGGACATACAGGCGGAACAATTGATAAATTAGAAGCAGTAGAAGGATTCCACGTTGAAA
TTACGAAAGAGCAGTTCATTGATATTGTAAACCGTGACAAAGTAGCTGTTATTGGACAAACAGGAAACTTAACACCTGCA
GATAAAAAGATTTATGCATTACGCGATGTAACAGGAACAGTAAACTCAATTCCTTTAATCGCAAGTTCAATTATGAGTAA
AAAAATTGCAGCTGGTGCAGATGCAATCGTACTTGATGTAAAAACAGGTGCTGGCGCATTTATGAAAACAGAAGAAGATG
CAAAAGAATTAGCACATGCGATGGTACGTATCGGAAATAATGTAGGACGTCAAACTATGGCTGTTATTTCAGACATGTCA
CAACCGCTTGGATTTGCGATTGGTAACGCACTAGAAGTGAAAGAAGCAATTGATACGTTAAAAGGTGAAGGTCCAGAAGA
TTTAACAGAATTAGTACTCGTATTAGGAAGTCAGATGGTTGTACTTGCGAAAAAAGCTAATACATTAGAAGAAGCGCGTG
AAATGTTAATTGAAGTGATGAAGAACGGAAAAGCAACTGAGAAGTTTAAAGAATTCTTAAACAATCAAGGCGGAGATAGC
TCAATTGTAGACAATCCAGAAAAAATGCCACAGGCGAAGTATGTAATTGATGTACCTGCTAAAACTTCAGGTGTTATTTC
TAACATTGTTGCAGATGAAATCGGTATCGCAGCTATGCTACTTGGTGCTGGTCGTGCAACAAAAGAAGATGAAATTGATT
TAGCAGTAGGATTAATGTTACGTAAAAAAGTGGGCGATGCAGTAAAAGAAGGCGAGCCATTCGTAACGATTTATGCAAAT
CGCGAAAATGTAGAAGATGTAAAAGCTAAAATTTATGAGAACATTTCTATCGCTGAAACAGCAGTGGCTCCTAAATTAGT
TCATACAGTTATTACTGACTAA

Upstream 100 bases:

>100_bases
GTTACTTTTCGGTGCAACATTAGTAAGTTTCTTATCAGCAACAATCGTAGGCTTATTATTTTAATAGATTCATATCATAT
AAAAAGGAATGGTGATTGTA

Downstream 100 bases:

>100_bases
TTATAATTACACTTACTTTGAGGGGGAAATAATATGGATAAGAAAAAATATATTGAAGAAGCAAATAAGATGTTGTCGAA
AGCATATATTCCGTATTCAA

Product: pyrimidine-nucleoside phosphorylase

Products: NA

Alternate protein names: PYNP [H]

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MRMVDIIAKKRDGKELTTEEIKFFINGYTDGSIPDYQVSALAMAIFFKDMTDRERADLTMAMVESGETIDLSAIEGIKVD
KHSTGGVGDTTTLVLGPLVAALDVPVAKMSGRGLGHTGGTIDKLEAVEGFHVEITKEQFIDIVNRDKVAVIGQTGNLTPA
DKKIYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTEEDAKELAHAMVRIGNNVGRQTMAVISDMS
QPLGFAIGNALEVKEAIDTLKGEGPEDLTELVLVLGSQMVVLAKKANTLEEAREMLIEVMKNGKATEKFKEFLNNQGGDS
SIVDNPEKMPQAKYVIDVPAKTSGVISNIVADEIGIAAMLLGAGRATKEDEIDLAVGLMLRKKVGDAVKEGEPFVTIYAN
RENVEDVKAKIYENISIAETAVAPKLVHTVITD

Sequences:

>Translated_433_residues
MRMVDIIAKKRDGKELTTEEIKFFINGYTDGSIPDYQVSALAMAIFFKDMTDRERADLTMAMVESGETIDLSAIEGIKVD
KHSTGGVGDTTTLVLGPLVAALDVPVAKMSGRGLGHTGGTIDKLEAVEGFHVEITKEQFIDIVNRDKVAVIGQTGNLTPA
DKKIYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTEEDAKELAHAMVRIGNNVGRQTMAVISDMS
QPLGFAIGNALEVKEAIDTLKGEGPEDLTELVLVLGSQMVVLAKKANTLEEAREMLIEVMKNGKATEKFKEFLNNQGGDS
SIVDNPEKMPQAKYVIDVPAKTSGVISNIVADEIGIAAMLLGAGRATKEDEIDLAVGLMLRKKVGDAVKEGEPFVTIYAN
RENVEDVKAKIYENISIAETAVAPKLVHTVITD
>Mature_433_residues
MRMVDIIAKKRDGKELTTEEIKFFINGYTDGSIPDYQVSALAMAIFFKDMTDRERADLTMAMVESGETIDLSAIEGIKVD
KHSTGGVGDTTTLVLGPLVAALDVPVAKMSGRGLGHTGGTIDKLEAVEGFHVEITKEQFIDIVNRDKVAVIGQTGNLTPA
DKKIYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTEEDAKELAHAMVRIGNNVGRQTMAVISDMS
QPLGFAIGNALEVKEAIDTLKGEGPEDLTELVLVLGSQMVVLAKKANTLEEAREMLIEVMKNGKATEKFKEFLNNQGGDS
SIVDNPEKMPQAKYVIDVPAKTSGVISNIVADEIGIAAMLLGAGRATKEDEIDLAVGLMLRKKVGDAVKEGEPFVTIYAN
RENVEDVKAKIYENISIAETAVAPKLVHTVITD

Specific function: The Enzymes Which Catalyze The Reversible Phosphorolysis Of Pyrimidine Nucleosides Are Involved In The Degradation Of These Compounds And In Their Utilization As Carbon And Energy Sources, Or In The Rescue Of Pyrimidine Bases For Nucleotide Synthesis. [C

COG id: COG0213

COG function: function code F; Thymidine phosphorylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family [H]

Homologues:

Organism=Homo sapiens, GI166158925, Length=423, Percent_Identity=35.4609929078014, Blast_Score=268, Evalue=9e-72,
Organism=Homo sapiens, GI4503445, Length=423, Percent_Identity=35.4609929078014, Blast_Score=268, Evalue=9e-72,
Organism=Homo sapiens, GI166158922, Length=423, Percent_Identity=35.4609929078014, Blast_Score=268, Evalue=9e-72,
Organism=Escherichia coli, GI1790842, Length=404, Percent_Identity=46.7821782178218, Blast_Score=338, Evalue=4e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000312
- InterPro:   IPR017459
- InterPro:   IPR020072
- InterPro:   IPR013102
- InterPro:   IPR018090
- InterPro:   IPR000053
- InterPro:   IPR017872 [H]

Pfam domain/function: PF02885 Glycos_trans_3N; PF00591 Glycos_transf_3; PF07831 PYNP_C [H]

EC number: =2.4.2.2 [H]

Molecular weight: Translated: 46322; Mature: 46322

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00647 THYMID_PHOSPHORYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMVDIIAKKRDGKELTTEEIKFFINGYTDGSIPDYQVSALAMAIFFKDMTDRERADLTM
CCHHHHHHCCCCCCCCCHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHEEH
AMVESGETIDLSAIEGIKVDKHSTGGVGDTTTLVLGPLVAALDVPVAKMSGRGLGHTGGT
EECCCCCEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCC
IDKLEAVEGFHVEITKEQFIDIVNRDKVAVIGQTGNLTPADKKIYALRDVTGTVNSIPLI
HHHHHHCCCCEEEECHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHH
ASSIMSKKIAAGADAIVLDVKTGAGAFMKTEEDAKELAHAMVRIGNNVGRQTMAVISDMS
HHHHHHHHHHCCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
QPLGFAIGNALEVKEAIDTLKGEGPEDLTELVLVLGSQMVVLAKKANTLEEAREMLIEVM
CCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHH
KNGKATEKFKEFLNNQGGDSSIVDNPEKMPQAKYVIDVPAKTSGVISNIVADEIGIAAML
HCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
LGAGRATKEDEIDLAVGLMLRKKVGDAVKEGEPFVTIYANRENVEDVKAKIYENISIAET
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCHHHH
AVAPKLVHTVITD
HHHHHHHHHHHCC
>Mature Secondary Structure
MRMVDIIAKKRDGKELTTEEIKFFINGYTDGSIPDYQVSALAMAIFFKDMTDRERADLTM
CCHHHHHHCCCCCCCCCHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHEEH
AMVESGETIDLSAIEGIKVDKHSTGGVGDTTTLVLGPLVAALDVPVAKMSGRGLGHTGGT
EECCCCCEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCC
IDKLEAVEGFHVEITKEQFIDIVNRDKVAVIGQTGNLTPADKKIYALRDVTGTVNSIPLI
HHHHHHCCCCEEEECHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHH
ASSIMSKKIAAGADAIVLDVKTGAGAFMKTEEDAKELAHAMVRIGNNVGRQTMAVISDMS
HHHHHHHHHHCCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
QPLGFAIGNALEVKEAIDTLKGEGPEDLTELVLVLGSQMVVLAKKANTLEEAREMLIEVM
CCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHH
KNGKATEKFKEFLNNQGGDSSIVDNPEKMPQAKYVIDVPAKTSGVISNIVADEIGIAAML
HCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
LGAGRATKEDEIDLAVGLMLRKKVGDAVKEGEPFVTIYANRENVEDVKAKIYENISIAET
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCHHHH
AVAPKLVHTVITD
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10568751 [H]