Click here to switch to the map view.

The map label for this gene is yocR [H]

Identifier: 49184715

GI number: 49184715

Start: 1721598

End: 1722935

Strand: Direct

Name: yocR [H]

Synonym: BAS1701

Alternate gene names: 49184715

Gene position: 1721598-1722935 (Clockwise)

Preceding gene: 49184713

Following gene: 49184717

Centisome position: 32.93

GC content: 36.17

Gene sequence:

>1338_bases
ATGAATTCACAGCAATGGACATCGAAATTAGGTTTCGTATTAGCTGCAGCAGGTTCAGCAATTGGTCTAGGGGCGATTTG
GAAGTTCCCATACATGGCCGGAATTGGAGGGGGCGGCGCGTTCTTCCTTATTTTCATCGGTTTCACATTATTAATTGGTT
TACCACTATTATTAGCTGAATTCGTTATCGGAAGAAGTACACAAAAAGAGGCTGTTGATGCGTATAGAGAAATCGCACCA
AAAACATTATGGCCATGGTTAGGGAAATTAGGGATTGTAACATGTTTCATATTACTTTCTTTCTACAGTGTTGTAGGAGG
CTGGATTTTATTATATTTATGGAATGCAATTACAGGTAGACTATGGGAAGGAAATGGAGCATACGAAGCTACGTTTGGTG
AAATCATTTCCAATCCGTATTTAGCAGTAGGATCACAGCTATTATTCATCCTTATTACTATTTTTATTGTAAGTAAAGGT
GTACAAAATGGTGTTGAAAAGGTAAATAAATATTTCATGCCAGCGTTATTCGTTTTATTCTTTGTATTAATCGTTCGTGC
ACTTACGTTAGATGGTGCAGGAGAAGGGGTTCGTTTCTTCTTACAACCTGATTTCTCAAATGTAACATCAGAAGTAATTT
TATATGCGATGGGTCAATCGTTCTTCTCATTATCGGTCGGTGTAGCAGTAATGGTAACGTATAGTTCATACTTACCGAAG
GAAGAAAGTTTACCGCGTTCAGCATTTTCAATCGTTGGTTTAACACTTGTCATTACATTACTTGCAGGTCTTGCAATTTT
CCCAGTTGTGTTCGCATTTGGATTAGAACCATCGCAAGGACCAGGACTATTATTTATCGTATTACCTGCTATTTTCAGTA
AAATGGCGTTCGGAAAAGTGTTCTTCGTTATTTTCTTATTGCTGTTCTTCTTCGCAACGATTACATCGGCTATTTCTATG
CTAGAAATTAGTGTTGCGTCGTTAACATCAAAAGGTAAAGGGAAACGCGAGAAAATGGCCTTAATTGTAGGGTTATTAAT
CTTCGTTGTTGGAGTACCATCAGCATTATCATTTGGTATATTAAGTGATTTGAAAATTTTCGGAAAGACAGTCTTTGATT
TAGCGGACTATGCAGTTAGTAACGTACTAATGCCACTTGGTGTTTTATTAGTTTCCATCTTTGTTCCTTTAAAAATGAAG
AAAGATGTATTAATGAAAGAACTTGGTGTAAGTAAAAATAAGGGCTATAAATTATTCGTATTATGGTTATTCTTACTTCG
CTTTATCGCACCAATTGCGATTATTATCGTATTCTTAAATGTACTTGGCATTATTTAA

Upstream 100 bases:

>100_bases
ATTAGTAGGGAGGAAGTGAACGTATTAGAAAGAAGTGTGGATAGAACAATATAAATACTGAATTGTAAGACAGAAAAAGA
TAAAGAGAGGAGATTAACAA

Downstream 100 bases:

>100_bases
AAAGAAAGGTAGCGTATCGTTTTATGATACGTTACCTTTTTATTTTGCACTTTTTTGTAATTCATTTACTGTTACGAACT
GATAGCCCTTCTTAGATAAA

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MNSQQWTSKLGFVLAAAGSAIGLGAIWKFPYMAGIGGGGAFFLIFIGFTLLIGLPLLLAEFVIGRSTQKEAVDAYREIAP
KTLWPWLGKLGIVTCFILLSFYSVVGGWILLYLWNAITGRLWEGNGAYEATFGEIISNPYLAVGSQLLFILITIFIVSKG
VQNGVEKVNKYFMPALFVLFFVLIVRALTLDGAGEGVRFFLQPDFSNVTSEVILYAMGQSFFSLSVGVAVMVTYSSYLPK
EESLPRSAFSIVGLTLVITLLAGLAIFPVVFAFGLEPSQGPGLLFIVLPAIFSKMAFGKVFFVIFLLLFFFATITSAISM
LEISVASLTSKGKGKREKMALIVGLLIFVVGVPSALSFGILSDLKIFGKTVFDLADYAVSNVLMPLGVLLVSIFVPLKMK
KDVLMKELGVSKNKGYKLFVLWLFLLRFIAPIAIIIVFLNVLGII

Sequences:

>Translated_445_residues
MNSQQWTSKLGFVLAAAGSAIGLGAIWKFPYMAGIGGGGAFFLIFIGFTLLIGLPLLLAEFVIGRSTQKEAVDAYREIAP
KTLWPWLGKLGIVTCFILLSFYSVVGGWILLYLWNAITGRLWEGNGAYEATFGEIISNPYLAVGSQLLFILITIFIVSKG
VQNGVEKVNKYFMPALFVLFFVLIVRALTLDGAGEGVRFFLQPDFSNVTSEVILYAMGQSFFSLSVGVAVMVTYSSYLPK
EESLPRSAFSIVGLTLVITLLAGLAIFPVVFAFGLEPSQGPGLLFIVLPAIFSKMAFGKVFFVIFLLLFFFATITSAISM
LEISVASLTSKGKGKREKMALIVGLLIFVVGVPSALSFGILSDLKIFGKTVFDLADYAVSNVLMPLGVLLVSIFVPLKMK
KDVLMKELGVSKNKGYKLFVLWLFLLRFIAPIAIIIVFLNVLGII
>Mature_445_residues
MNSQQWTSKLGFVLAAAGSAIGLGAIWKFPYMAGIGGGGAFFLIFIGFTLLIGLPLLLAEFVIGRSTQKEAVDAYREIAP
KTLWPWLGKLGIVTCFILLSFYSVVGGWILLYLWNAITGRLWEGNGAYEATFGEIISNPYLAVGSQLLFILITIFIVSKG
VQNGVEKVNKYFMPALFVLFFVLIVRALTLDGAGEGVRFFLQPDFSNVTSEVILYAMGQSFFSLSVGVAVMVTYSSYLPK
EESLPRSAFSIVGLTLVITLLAGLAIFPVVFAFGLEPSQGPGLLFIVLPAIFSKMAFGKVFFVIFLLLFFFATITSAISM
LEISVASLTSKGKGKREKMALIVGLLIFVVGVPSALSFGILSDLKIFGKTVFDLADYAVSNVLMPLGVLLVSIFVPLKMK
KDVLMKELGVSKNKGYKLFVLWLFLLRFIAPIAIIIVFLNVLGII

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=490, Percent_Identity=25.7142857142857, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI171184408, Length=407, Percent_Identity=25.3071253071253, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI171184406, Length=407, Percent_Identity=25.3071253071253, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI171184404, Length=407, Percent_Identity=25.3071253071253, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI7657587, Length=403, Percent_Identity=24.8138957816377, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI188528618, Length=427, Percent_Identity=25.0585480093677, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI197276623, Length=450, Percent_Identity=25.1111111111111, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI54607094, Length=450, Percent_Identity=25.1111111111111, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI134304856, Length=399, Percent_Identity=26.8170426065163, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI4507041, Length=453, Percent_Identity=24.5033112582781, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI289191351, Length=401, Percent_Identity=24.1895261845387, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI4557046, Length=401, Percent_Identity=24.1895261845387, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI289191377, Length=386, Percent_Identity=24.3523316062176, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI4507043, Length=399, Percent_Identity=24.5614035087719, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI51468073, Length=531, Percent_Identity=23.1638418079096, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI33354281, Length=300, Percent_Identity=26, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI58219014, Length=302, Percent_Identity=26.158940397351, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI11181770, Length=292, Percent_Identity=25.3424657534247, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI194018524, Length=300, Percent_Identity=29, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI21361693, Length=110, Percent_Identity=35.4545454545455, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI12408638, Length=268, Percent_Identity=25.7462686567164, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI5032097, Length=348, Percent_Identity=25.5747126436782, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI197276625, Length=120, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI55749589, Length=287, Percent_Identity=25.0871080139373, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI300360519, Length=311, Percent_Identity=25.4019292604502, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI218563756, Length=340, Percent_Identity=26.4705882352941, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI92859670, Length=246, Percent_Identity=26.0162601626016, Blast_Score=69, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI25146584, Length=415, Percent_Identity=24.3373493975904, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17555248, Length=439, Percent_Identity=26.1958997722096, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17554804, Length=466, Percent_Identity=25.3218884120172, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI212642127, Length=425, Percent_Identity=22.8235294117647, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI133952791, Length=247, Percent_Identity=29.9595141700405, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17136952, Length=413, Percent_Identity=25.6658595641646, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI281364394, Length=415, Percent_Identity=26.2650602409639, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI28574704, Length=415, Percent_Identity=26.2650602409639, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI17136950, Length=415, Percent_Identity=26.2650602409639, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI28574702, Length=415, Percent_Identity=26.2650602409639, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24762620, Length=413, Percent_Identity=27.6029055690073, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24639514, Length=504, Percent_Identity=24.4047619047619, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI221329674, Length=508, Percent_Identity=24.2125984251968, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24639516, Length=529, Percent_Identity=23.2514177693762, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI45550877, Length=517, Percent_Identity=24.1779497098646, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24661428, Length=377, Percent_Identity=27.3209549071618, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI45551183, Length=424, Percent_Identity=25.2358490566038, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI281365034, Length=407, Percent_Identity=25.5528255528256, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=27.6094276094276, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24639853, Length=511, Percent_Identity=26.4187866927593, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45551088, Length=372, Percent_Identity=25.5376344086022, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24652942, Length=372, Percent_Identity=25.5376344086022, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI19921936, Length=399, Percent_Identity=25.8145363408521, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI281363702, Length=362, Percent_Identity=26.2430939226519, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24582567, Length=398, Percent_Identity=25.1256281407035, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI281363700, Length=338, Percent_Identity=25.7396449704142, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24654186, Length=313, Percent_Identity=26.8370607028754, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19921352, Length=212, Percent_Identity=30.188679245283, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24584353, Length=212, Percent_Identity=30.188679245283, Blast_Score=79, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48426; Mature: 48426

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]