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The map label for this gene is ccdA [H]

Identifier: 49184661

GI number: 49184661

Start: 1663234

End: 1663947

Strand: Direct

Name: ccdA [H]

Synonym: BAS1647

Alternate gene names: 49184661

Gene position: 1663234-1663947 (Clockwise)

Preceding gene: 49184660

Following gene: 49184662

Centisome position: 31.81

GC content: 36.27

Gene sequence:

>714_bases
ATGAATGCAGCAGATTTAACAATTTGGCTTGTAGCAGGGGCAGGAGTATTGTCATTTATATCACCATGCTCTTTACCGCT
ATATCCATCTTATTTATCTTATATTACAGGTGTGTCTATTCAAGATTTAAAAGAAAATCGTGGGATTATGCAAAAATCAG
CGATTATACATACCGTATTTTTTATGATCGGATTTTCGGTTATATTTTACGCGTTAGGTTTATCAGTAAGCTGGATTGGA
ATCACATTTTCATCTAACCAAAAATTAATTCAACAAATTGGTGGGATTTTTATTGTTTTAATGGGGCTATTTATGACGGG
CTTGTTTCAGCCTAAGTGGCTTATGGCAGAGAAAAAGGTGCAGTATAGAAGTAAATCGACTGGATATATTCGCTCGATTT
TAGTCGGTATGACATATGCAGCGGGTTGGACTCCATGTGTTGGACCGATATTTTCAGCTGTACTCATGCTTGGTGCGACG
AATCCTGAAGGGGCACTTCTTTATATTACAGCGTATACGCTTGGATTTGCAGTTCCATTTTTCGTGATGGCATTCTTTAT
TGGGAAGATAAAATGGATTGTTACATATGCCAATGTCATGATGAAAATTGGCGGTGGAATGATGATTGTAACAGGTATTT
TATTGTATACAAATCAAATGACGAAAATTACAGCATTCTTTATTCGTCTATTCGGCGGATTTACAGGTTTTTAA

Upstream 100 bases:

>100_bases
GTTTATTTTGTATGTCGGTTGTGCTAATTGTCGGAGAGTGCATATAGCCTCTTTTTTTAAGAATTAACACTACTTGTTGT
AGTGTTTCAGGGGGAATAAA

Downstream 100 bases:

>100_bases
AAATGAGGAGGAAAAAAAGTGAAGAAACTAATTGCTATTATACTGGCCGGAGCATTAATTTGGGCCGGAGTTAATTTTTA
TAATTCAAAGAAAGAAGAAA

Product: cytochrome c-type biogenesis protein CcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVFFMIGFSVIFYALGLSVSWIG
ITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKVQYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGAT
NPEGALLYITAYTLGFAVPFFVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF

Sequences:

>Translated_237_residues
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVFFMIGFSVIFYALGLSVSWIG
ITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKVQYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGAT
NPEGALLYITAYTLGFAVPFFVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF
>Mature_237_residues
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVFFMIGFSVIFYALGLSVSWIG
ITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKVQYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGAT
NPEGALLYITAYTLGFAVPFFVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 26055; Mature: 26055

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVF
CCCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
FMIGFSVIFYALGLSVSWIGITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKV
HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGATNPEGALLYITAYTLGFAVPF
HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHH
FVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVF
CCCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
FMIGFSVIFYALGLSVSWIGITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKV
HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGATNPEGALLYITAYTLGFAVPF
HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHH
FVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]