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The map label for this gene is yrkO [H]

Identifier: 49184494

GI number: 49184494

Start: 1499846

End: 1501009

Strand: Reverse

Name: yrkO [H]

Synonym: BAS1477

Alternate gene names: 49184494

Gene position: 1501009-1499846 (Counterclockwise)

Preceding gene: 49184495

Following gene: 49184490

Centisome position: 28.71

GC content: 35.22

Gene sequence:

>1164_bases
ATGACACAAAATATTTCACAAGGCGAGAGGATACACTCCATCGATATTATTAGAGGAATAGCTGTACTAGGTATTTTTCT
TGTTAACTGGCCCATTATCGCTGGGATTGACTCACGTGATCTTTCAGGAGTTTACGAGGGGCTAGATAGCTATATCCGTC
TATTTTACGATATGTTCATTCAAACAAAGTTTTATACTATCTTTTCATTTTTATTCGGCCTAGGCTTTTACATCTTTATG
ACTCGTGCTGAAGCAAAAACAGATCGACCAAAAACTTTATTTGTTCGTCGTTTACTTATTTTATTATTATTTGGTTTCTT
ACATTACGTTCTTTTATGGGACGGAGACATTTTACATAGTTATGCAATCGCTGGATTTTTCTTATTTTTATTTTATAAGA
GAAAACCTCGTACTATTTTAATATGGGCAATCGTTTTATTAAGTATTTTTCAATTTCTTATGCTAATCGCTACTATTGGT
ATTGCCTTCATGCCAAAGGAGGAACTTGGGTTATCCTTACCAATCATGCCACTTGAAGACTGGGTGTCACAAATACAAAA
TCGTTTCCATGCTTTTTATGCTAATGGAATTGGACTAAATGTATCAATGCTCCCAGAAACAGTTGGGCTATTTTTACTCG
GTTTATATGCCGGTAAAAAAGACATTTTCCGCCGCACGAAAGAGTTAGATCCAAAGCTAAAAAAATGGCAAATCATTATG
TTTGTTTTAACATTACCGTTTTGGTTCTTTATGGTTCGTTATTTCTTATCAACATCGTCATATGAACCACTTTATATGCA
AGGGCTTGCAATGTTTAGCGGAAAAACATTATTCATCTTCTATATTTTCACTCTTATGCGTTTATTACAAAAAGAAAAAT
GGCAAACATTATTACGTCCCTTCCAGTACGTTGGTCGAATGGCATTAACAAACTACATTTCACATACAATTGTTACGTTA
CTTGTATTTGGTCTATTGCTTAAAAGTTATTATCCAGCTCCATTATGGGTAGGACCACTATTTTGCGTCGGTTTCTACAC
GTTACAAATCTTTATTAGCCGCTGGTGGCTGTCACGTTATCAATACGGGCCACTTGAGTACATTTGGCATCTTGGTACGT
ACGGGAAAATGATGCCACTTAAAAAGAAAAGCAAGGTCTCATAA

Upstream 100 bases:

>100_bases
ATCTTACATAACTTAATAGTTAAAAAATGGAAATCTACCCTATACCCTCCATCTTACATTTTGTATAATAAAAGGGAATT
ACTTAACAAGGAGGAAAATA

Downstream 100 bases:

>100_bases
CAGTAACGAATCGGTTTTGAAATACAAAAATAAAAGGTTCAAATCGCATACGATTTGAACCTTTTATCAATTTTACGCTT
CTCTTACCGCACTTTGCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MTQNISQGERIHSIDIIRGIAVLGIFLVNWPIIAGIDSRDLSGVYEGLDSYIRLFYDMFIQTKFYTIFSFLFGLGFYIFM
TRAEAKTDRPKTLFVRRLLILLLFGFLHYVLLWDGDILHSYAIAGFFLFLFYKRKPRTILIWAIVLLSIFQFLMLIATIG
IAFMPKEELGLSLPIMPLEDWVSQIQNRFHAFYANGIGLNVSMLPETVGLFLLGLYAGKKDIFRRTKELDPKLKKWQIIM
FVLTLPFWFFMVRYFLSTSSYEPLYMQGLAMFSGKTLFIFYIFTLMRLLQKEKWQTLLRPFQYVGRMALTNYISHTIVTL
LVFGLLLKSYYPAPLWVGPLFCVGFYTLQIFISRWWLSRYQYGPLEYIWHLGTYGKMMPLKKKSKVS

Sequences:

>Translated_387_residues
MTQNISQGERIHSIDIIRGIAVLGIFLVNWPIIAGIDSRDLSGVYEGLDSYIRLFYDMFIQTKFYTIFSFLFGLGFYIFM
TRAEAKTDRPKTLFVRRLLILLLFGFLHYVLLWDGDILHSYAIAGFFLFLFYKRKPRTILIWAIVLLSIFQFLMLIATIG
IAFMPKEELGLSLPIMPLEDWVSQIQNRFHAFYANGIGLNVSMLPETVGLFLLGLYAGKKDIFRRTKELDPKLKKWQIIM
FVLTLPFWFFMVRYFLSTSSYEPLYMQGLAMFSGKTLFIFYIFTLMRLLQKEKWQTLLRPFQYVGRMALTNYISHTIVTL
LVFGLLLKSYYPAPLWVGPLFCVGFYTLQIFISRWWLSRYQYGPLEYIWHLGTYGKMMPLKKKSKVS
>Mature_386_residues
TQNISQGERIHSIDIIRGIAVLGIFLVNWPIIAGIDSRDLSGVYEGLDSYIRLFYDMFIQTKFYTIFSFLFGLGFYIFMT
RAEAKTDRPKTLFVRRLLILLLFGFLHYVLLWDGDILHSYAIAGFFLFLFYKRKPRTILIWAIVLLSIFQFLMLIATIGI
AFMPKEELGLSLPIMPLEDWVSQIQNRFHAFYANGIGLNVSMLPETVGLFLLGLYAGKKDIFRRTKELDPKLKKWQIIMF
VLTLPFWFFMVRYFLSTSSYEPLYMQGLAMFSGKTLFIFYIFTLMRLLQKEKWQTLLRPFQYVGRMALTNYISHTIVTLL
VFGLLLKSYYPAPLWVGPLFCVGFYTLQIFISRWWLSRYQYGPLEYIWHLGTYGKMMPLKKKSKVS

Specific function: Involved in transport (Potential) [H]

COG id: COG2311

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788475, Length=132, Percent_Identity=32.5757575757576, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007349 [H]

Pfam domain/function: PF04235 DUF418 [H]

EC number: NA

Molecular weight: Translated: 45528; Mature: 45397

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQNISQGERIHSIDIIRGIAVLGIFLVNWPIIAGIDSRDLSGVYEGLDSYIRLFYDMFI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QTKFYTIFSFLFGLGFYIFMTRAEAKTDRPKTLFVRRLLILLLFGFLHYVLLWDGDILHS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YAIAGFFLFLFYKRKPRTILIWAIVLLSIFQFLMLIATIGIAFMPKEELGLSLPIMPLED
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHH
WVSQIQNRFHAFYANGIGLNVSMLPETVGLFLLGLYAGKKDIFRRTKELDPKLKKWQIIM
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
FVLTLPFWFFMVRYFLSTSSYEPLYMQGLAMFSGKTLFIFYIFTLMRLLQKEKWQTLLRP
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FQYVGRMALTNYISHTIVTLLVFGLLLKSYYPAPLWVGPLFCVGFYTLQIFISRWWLSRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
QYGPLEYIWHLGTYGKMMPLKKKSKVS
CCCHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TQNISQGERIHSIDIIRGIAVLGIFLVNWPIIAGIDSRDLSGVYEGLDSYIRLFYDMFI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QTKFYTIFSFLFGLGFYIFMTRAEAKTDRPKTLFVRRLLILLLFGFLHYVLLWDGDILHS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YAIAGFFLFLFYKRKPRTILIWAIVLLSIFQFLMLIATIGIAFMPKEELGLSLPIMPLED
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHH
WVSQIQNRFHAFYANGIGLNVSMLPETVGLFLLGLYAGKKDIFRRTKELDPKLKKWQIIM
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
FVLTLPFWFFMVRYFLSTSSYEPLYMQGLAMFSGKTLFIFYIFTLMRLLQKEKWQTLLRP
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FQYVGRMALTNYISHTIVTLLVFGLLLKSYYPAPLWVGPLFCVGFYTLQIFISRWWLSRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
QYGPLEYIWHLGTYGKMMPLKKKSKVS
CCCHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]