Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is yjjV [C]
Identifier: 49183245
GI number: 49183245
Start: 211398
End: 212162
Strand: Direct
Name: yjjV [C]
Synonym: BAS0212
Alternate gene names: 49183245
Gene position: 211398-212162 (Clockwise)
Preceding gene: 49183244
Following gene: 49183247
Centisome position: 4.04
GC content: 34.12
Gene sequence:
>765_bases ATGAAATGGATTGATAGTCATATACATGTCGACCAATACAAGGATGAAGAGAAAAGTAGATTACTGAAAGATGTGGAAAA TAGTAAAGAGATACAGGGGCTTATTGCGGTATCTATGAATTATCAATCAAGTAAAGAAATCTTATCTTTAGCAAAACGAT ATTCCTTTGTACATCCAGCAGTAGGTTTTCATCCGGAGCAACCGATTCATAAAGAAGAATGTGAGAAAATTTATAAATTA ATTGAGGATCATGTAGAGGATATAGTAGCGATTGGTGAAGTAGGCTTACCGTATTACTTAAGAAAAGAAGATGAGCATAT TGCTATCAATTCGTATATATCAGTGCTACAACGGTTTGTTGAACTAGCTAGTAAATATGATTTACCAATTGTATTGCATG CAGTGTATGAAGATGCTGATGTTGTATGTGATTTACTGGAGAAACATAAAGTTTCGCGTGCGCACTTTCATTGGTTTAAA GGAAGTGAAACAACAATGGAACGGATGATGAGGAACGGTTATTATATTTCTATTACACCAGATGTTTTGCATAAGGAGAA GATTAGAAAAATTGTTTCGTATTATCCTCTTGAATATATGATGGTAGAAACAGATGGACCGTGGGGATTTCAAGAGGGTG TTATGACACATCCGGGAATGATTCGAGAGGTATTAAAGGAAATTAGTGTTATAAAAAACGTAGCTGTTGATAAGGTTGCA GAAACGATATATGAAAATACGATTCAATTTTATTTGAAAGGATAG
Upstream 100 bases:
>100_bases ATTGGATTATTTGATATCATAACAAACTTAATTGTTAAATAATATAGATGACAAAACAAGAAGGGAGATCCTTTCTTGTT TTTTTTATGGGGGAATAAAG
Downstream 100 bases:
>100_bases AAGTGTTATTTTAGCCCTTCTTATTATAGAGAAATAGAAGTTGAATTTATTTATGAACATAATCAATGGGTTATTAATAA TATGCCACGTTTTGGTTTTG
Product: TatD family deoxyribonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKEILSLAKRYSFVHPAVGFHPEQPIHKEECEKIYKL IEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQRFVELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFK GSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWGFQEGVMTHPGMIREVLKEISVIKNVAVDKVA ETIYENTIQFYLKG
Sequences:
>Translated_254_residues MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKEILSLAKRYSFVHPAVGFHPEQPIHKEECEKIYKL IEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQRFVELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFK GSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWGFQEGVMTHPGMIREVLKEISVIKNVAVDKVA ETIYENTIQFYLKG >Mature_254_residues MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKEILSLAKRYSFVHPAVGFHPEQPIHKEECEKIYKL IEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQRFVELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFK GSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWGFQEGVMTHPGMIREVLKEISVIKNVAVDKVA ETIYENTIQFYLKG
Specific function: Unknown
COG id: COG0084
COG function: function code L; Mg-dependent DNase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tatD DNase family [H]
Homologues:
Organism=Homo sapiens, GI110349730, Length=219, Percent_Identity=27.3972602739726, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI110349734, Length=219, Percent_Identity=27.3972602739726, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI226061853, Length=226, Percent_Identity=26.5486725663717, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI226061614, Length=212, Percent_Identity=26.4150943396226, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI226061595, Length=179, Percent_Identity=27.3743016759777, Blast_Score=77, Evalue=2e-14, Organism=Escherichia coli, GI87082439, Length=262, Percent_Identity=25.1908396946565, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=26.0536398467433, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI48994985, Length=200, Percent_Identity=25.5, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=23.574144486692, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015992 - InterPro: IPR001130 - InterPro: IPR018228 - InterPro: IPR012278 [H]
Pfam domain/function: PF01026 TatD_DNase [H]
EC number: 3.1.21.-
Molecular weight: Translated: 29696; Mature: 29696
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKEILSLAKRYSFVHPA CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCC VGFHPEQPIHKEECEKIYKLIEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQRFV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEHHHHHHHHHHHHH ELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFKGSETTMERMMRNGYYISITP HHHHCCCCCEEHHHHHCCHHHHHHHHHHHCCHHHHHEEECCCHHHHHHHHHCCEEEEECH DVLHKEKIRKIVSYYPLEYMMVETDGPWGFQEGVMTHPGMIREVLKEISVIKNVAVDKVA HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ETIYENTIQFYLKG HHHHHHHHHHEECC >Mature Secondary Structure MKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKEILSLAKRYSFVHPA CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCC VGFHPEQPIHKEECEKIYKLIEDHVEDIVAIGEVGLPYYLRKEDEHIAINSYISVLQRFV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEHHHHHHHHHHHHH ELASKYDLPIVLHAVYEDADVVCDLLEKHKVSRAHFHWFKGSETTMERMMRNGYYISITP HHHHCCCCCEEHHHHHCCHHHHHHHHHHHCCHHHHHEEECCCHHHHHHHHHCCEEEEECH DVLHKEKIRKIVSYYPLEYMMVETDGPWGFQEGVMTHPGMIREVLKEISVIKNVAVDKVA HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ETIYENTIQFYLKG HHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]