Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is dppB [H]
Identifier: 49183219
GI number: 49183219
Start: 185821
End: 186744
Strand: Direct
Name: dppB [H]
Synonym: BAS0186
Alternate gene names: 49183219
Gene position: 185821-186744 (Clockwise)
Preceding gene: 49183217
Following gene: 49183220
Centisome position: 3.55
GC content: 35.5
Gene sequence:
>924_bases ATGGAAGTGTATGTAATTAAAAAATTATCGGTTATGGTGTTCACACTATGGGTTATTACGACAGTGACATTTCTAATTAT GCATATTATTCCGGGAGATCCATTTTCATCAGATGCAAAAATCTTTCCTGAAGAAGTGATCCAAAACATGAGGGCGAAGT ATCACCTTGATGAACCGTTATGGAATCAATATGTTGCTTATTTAGACGGTGTAGTTCATTTTGATTTTGGTGAATCCGTT CAGTCGACGGGGCAAGGTGTATCAGAGATTATAACGACCGGATTTGGTCCATCAGCGATTATTGGTTTACAAGCACTTAT TATTTCATTATTAGTTGGAATTGCTGCAGGTACATTTGCTGCTCTATATCATGGGAAAGTAATTGACTATAGTGTGAGCT TACTTGCGATTCTCGGTATTTCTATTCCAAGTTTTATTTTAGCACCATTATTTATACAAGTATTCGCTATACAGTTTGAA CTTTTACCAGTAGCGTCTTGGGGCACCTTCGAACATACGGTATTGCCATCCTTTGCATTAGCACTAGGACCAATCGCGGT TATTACAAGATTTGTTCGTTCTAATATGATCGAAGTTTTGCAGAGTGATTATATTAAGCTAGCGAGAGCGAAAGGTATAC CAATTAAGAAAATCATTATAAGACACGCTCTTCGAAATGCAATTGTTCCAGTACTCACATTTGTTGGACCGTTAATGGCT GGACTTTTAACAGGTACTTTCGTTATTGAAAAGATTTTTTCAATTCCTGGTCTCGGGAAATATTTTGTAGATAGTATTTT TAATCGAGATTATCCAGTGATTATGGGAACAACCATTTTTTATAGTGCACTTTTAATCTTATGTATTTTTATTACAGATA TTATTCACCGTATTGTTGATCCACGTATTCGTTCTATTACGTAA
Upstream 100 bases:
>100_bases ATTTTTTAGGATCAAGGCTTTTTGTATTCTAAAAAGAGAAAAGGGAGTAATGGAAAAAGTACGTTCATAAAACAAAGTAA ATTCATGTGTTTAGGGGGTT
Downstream 100 bases:
>100_bases GGAGGGGGATGTTTAGATGGGGGCTTATGAAATTAATAATCAGTTATTAACGAATGAAGAGAAAAAAGAATTAACGATAA ATAAAGATCAGCAAAAGATT
Product: oligopeptide ABC transporter permease
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MEVYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESV QSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFE LLPVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMA GLLTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVDPRIRSIT
Sequences:
>Translated_307_residues MEVYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESV QSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFE LLPVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMA GLLTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVDPRIRSIT >Mature_307_residues MEVYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESV QSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFE LLPVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMA GLLTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVDPRIRSIT
Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]
COG id: COG0601
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=40.5228758169935, Blast_Score=259, Evalue=2e-70, Organism=Escherichia coli, GI1787053, Length=304, Percent_Identity=36.8421052631579, Blast_Score=213, Evalue=1e-56, Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=35.207100591716, Blast_Score=204, Evalue=7e-54, Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=32.5806451612903, Blast_Score=186, Evalue=1e-48, Organism=Escherichia coli, GI1787761, Length=317, Percent_Identity=31.2302839116719, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1788504, Length=360, Percent_Identity=28.8888888888889, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.9377289377289, Blast_Score=124, Evalue=8e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 33919; Mature: 33919
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEVYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPL CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH WNQYVAYLDGVVHFDFGESVQSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFA HHHHHHHHCCHHEECCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALYHGKVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFELLPVASWGTFEHTVLPSFAL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH ALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLLTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVD HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC PRIRSIT CHHHCCC >Mature Secondary Structure MEVYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRAKYHLDEPL CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH WNQYVAYLDGVVHFDFGESVQSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFA HHHHHHHHCCHHEECCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALYHGKVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFELLPVASWGTFEHTVLPSFAL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH ALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLLTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLILCIFITDIIHRIVD HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC PRIRSIT CHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1766370; 9384377 [H]