Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is rplW
Identifier: 49183146
GI number: 49183146
Start: 122587
End: 122877
Strand: Direct
Name: rplW
Synonym: BAS0112
Alternate gene names: 49183146
Gene position: 122587-122877 (Clockwise)
Preceding gene: 49183145
Following gene: 49183147
Centisome position: 2.34
GC content: 39.86
Gene sequence:
>291_bases ATGAGAGATCCTCGTGATATCATTAAGCGCCCAGTTATCACTGAACGTTCTATGGAAATGATGGCTGAAAAAAAATACAC GTTCGATGTGGACGTTAAATCTAATAAAACAGAAGTTAAAGATGCTCTTGAAGCGATCTTTGGTGTTAAAGTAGAAAAAG TGAACATCATGAACTACAAGCCGAAAGCAAAACGCGTTGGTCGTCACGCTGGTTTTACTAGCCGTCGTCGTAAAGCAATC GTTAAGCTAACTGCTGACAGCAAAGAAATCGAAATCTTCCAAGGCGTTTAA
Upstream 100 bases:
>100_bases TAATCACTGCTGATGGCGTAAACGTTTTAGACGTGCTTCATCATGATAAGCTAATCATGACAAAAGCGGCAGTGGAAAAA GTAGAGGAGGTGCTTGCATA
Downstream 100 bases:
>100_bases TTCTTACTAAAGAAGGAGGAAAATTGAGATGGGAATTAAAAAGTATAATCCAACTACTAACGGTCGTCGTAACATGACTA CGAATGATTTCGCTGAAATC
Product: 50S ribosomal protein L23
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 96; Mature: 96
Protein sequence:
>96_residues MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYKPKAKRVGRHAGFTSRRRKAI VKLTADSKEIEIFQGV
Sequences:
>Translated_96_residues MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYKPKAKRVGRHAGFTSRRRKAI VKLTADSKEIEIFQGV >Mature_96_residues MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYKPKAKRVGRHAGFTSRRRKAI VKLTADSKEIEIFQGV
Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
COG id: COG0089
COG function: function code J; Ribosomal protein L23
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribosomal protein L23P family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RL23_BACAA (C3P9Q7)
Other databases:
- EMBL: CP001598 - RefSeq: YP_002864763.1 - ProteinModelPortal: C3P9Q7 - SMR: C3P9Q7 - EnsemblBacteria: EBBACT00000124956 - GeneID: 7852291 - GenomeReviews: CP001598_GR - KEGG: bai:BAA_0128 - GeneTree: EBGT00050000002796 - ProtClustDB: PRK05738 - GO: GO:0005840 - GO: GO:0006412 - HAMAP: MF_01369_B - InterPro: IPR012677 - InterPro: IPR012678 - InterPro: IPR001014 - InterPro: IPR013025 - Gene3D: G3DSA:3.30.70.330
Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core
EC number: NA
Molecular weight: Translated: 11114; Mature: 11114
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: PS00050 RIBOSOMAL_L23
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYK CCCHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC PKAKRVGRHAGFTSRRRKAIVKLTADSKEIEIFQGV CHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECC >Mature Secondary Structure MRDPRDIIKRPVITERSMEMMAEKKYTFDVDVKSNKTEVKDALEAIFGVKVEKVNIMNYK CCCHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC PKAKRVGRHAGFTSRRRKAIVKLTADSKEIEIFQGV CHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA