Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is pth
Identifier: 49183085
GI number: 49183085
Start: 53564
End: 54124
Strand: Direct
Name: pth
Synonym: BAS0050
Alternate gene names: 49183085
Gene position: 53564-54124 (Clockwise)
Preceding gene: 49183084
Following gene: 49183086
Centisome position: 1.02
GC content: 34.4
Gene sequence:
>561_bases ATGAAATTGATAGTAGGACTTGGGAACCCGGGTAGAGAATATGAATTAACAAGGCATAATATTGGATTTATGGCGATTGA TGAACTTGCAAAGCGTTGGAATATTTCTTTGAACGAACAAAAGTTTAAAGGCTTATTTGGTGCAGGATTTGTTAATGGAG AAAAAGTAATCTTATTAAAGCCACTTACATATATGAATTTATCTGGGGAAAGTATTCGTCCGCTAATGGATTACTATAAA ATTGATGTAGAGGACTTCGTTGTTCTGTACGATGATTTAGATATCCCTGTAGGTAAATTACGCCTTCGTATGAAAGGTAG TGCTGGTGGACATAATGGTGTGAAATCAACAATTTCACATTTAGGAACACAAGAGTTTCAACGTATCCGCATGGGAATTG ATCGTCCGAAAAATGGAATGAAGGTAGTAGATTATGTATTAGGACGTTTTACATCGGAAGAAATTCCTGATGTAAATCAT TCTATTGAAAAAGCAGCAGATGCATGTGAAGAATGGTTAAATAAACCTTTTCTTCAAATCATGAATACTTTCAATAGTTA A
Upstream 100 bases:
>100_bases AGAATCTGTAAGTGTATTATTCAATTAATTGGATAGAATGAGACGTAACCAAGATTGGTTACGTCTTTTCGTATCGAAAA AAGAAAGTAGTGGTACAAGA
Downstream 100 bases:
>100_bases GGGTATGATTAGGAATATTTTATTCTGTTTTTACCCATACTAGCAGTAAATGTATTTTTAGGAGGCTAGTATGGAAGGGT ATTATTATTGCAGACATTGC
Product: peptidyl-tRNA hydrolase
Products: NA
Alternate protein names: PTH
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MKLIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYK IDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHLGTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNH SIEKAADACEEWLNKPFLQIMNTFNS
Sequences:
>Translated_186_residues MKLIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYK IDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHLGTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNH SIEKAADACEEWLNKPFLQIMNTFNS >Mature_186_residues MKLIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYK IDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHLGTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNH SIEKAADACEEWLNKPFLQIMNTFNS
Specific function: The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
COG id: COG0193
COG function: function code J; Peptidyl-tRNA hydrolase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PTH family
Homologues:
Organism=Homo sapiens, GI50897284, Length=168, Percent_Identity=32.1428571428571, Blast_Score=103, Evalue=1e-22, Organism=Escherichia coli, GI1787455, Length=188, Percent_Identity=39.3617021276596, Blast_Score=122, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6321983, Length=176, Percent_Identity=29.5454545454545, Blast_Score=75, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PTH_BACAN (Q81VY9)
Other databases:
- EMBL: AE016879 - EMBL: AE017334 - EMBL: AE017225 - RefSeq: NP_842619.1 - RefSeq: YP_016653.1 - RefSeq: YP_026337.1 - ProteinModelPortal: Q81VY9 - SMR: Q81VY9 - EnsemblBacteria: EBBACT00000008195 - EnsemblBacteria: EBBACT00000017228 - EnsemblBacteria: EBBACT00000022310 - GeneID: 1087397 - GeneID: 2819040 - GeneID: 2853113 - GenomeReviews: AE016879_GR - GenomeReviews: AE017225_GR - GenomeReviews: AE017334_GR - KEGG: ban:BA_0050 - KEGG: bar:GBAA_0050 - KEGG: bat:BAS0050 - TIGR: BA_0050 - TIGR: GBAA_0050 - GeneTree: EBGT00050000001189 - HOGENOM: HBG610927 - OMA: NESGRQV - ProtClustDB: PRK05426 - BioCyc: BANT260799:BAS0050-MONOMER - BioCyc: BANT261594:GBAA0050-MONOMER - BRENDA: 3.1.1.29 - GO: GO:0005737 - GO: GO:0006412 - HAMAP: MF_00083 - InterPro: IPR001328 - InterPro: IPR018171 - Gene3D: G3DSA:3.40.50.1470 - PANTHER: PTHR17224 - TIGRFAMs: TIGR00447
Pfam domain/function: PF01195 Pept_tRNA_hydro; SSF53178 Pept_tRNA_hydro
EC number: =3.1.1.29
Molecular weight: Translated: 21097; Mature: 21097
Theoretical pI: Translated: 7.66; Mature: 7.66
Prosite motif: PS01195 PEPT_TRNA_HYDROL_1; PS01196 PEPT_TRNA_HYDROL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLK CEEEEECCCCCCCEEEHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCEECCCEEEEEC PLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISH CCEEECCCCCCHHHHHHHHHCCHHHEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHH LGTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQI HCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH MNTFNS HHHHCC >Mature Secondary Structure MKLIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLK CEEEEECCCCCCCEEEHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCEECCCEEEEEC PLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISH CCEEECCCCCCHHHHHHHHHCCHHHEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHH LGTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQI HCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH MNTFNS HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12721629