Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
---|---|
Accession | NC_005945 |
Length | 5,228,663 |
Click here to switch to the map view.
The map label for this gene is abrB [H]
Identifier: 49183071
GI number: 49183071
Start: 40824
End: 41108
Strand: Reverse
Name: abrB [H]
Synonym: BAS0036
Alternate gene names: 49183071
Gene position: 41108-40824 (Counterclockwise)
Preceding gene: 49183182
Following gene: 49183055
Centisome position: 0.79
GC content: 33.68
Gene sequence:
>285_bases ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATTTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA
Upstream 100 bases:
>100_bases ATGATTGGTATCATATGTCCATAGGGTATTTTGTCGAAAAATGACGAATCTAAAAATAGACTCGAAACTTATAAACTATT TCTTTAGGAGGAAAAGAATT
Downstream 100 bases:
>100_bases GCTTCTCAATTATGAGAAGCTTATTTTTTATCGACATGATAGATTTGATATACATCGCGTTTCGACAAATCTCGATCTTT AGCGACTGTTTTTATTGCCT
Product: transition state transcriptional regulatory protein AbrB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 94; Mature: 94
Protein sequence:
>94_residues MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLFLAEGKIILSKEGAE QILNELQDYIETAK
Sequences:
>Translated_94_residues MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLFLAEGKIILSKEGAE QILNELQDYIETAK >Mature_94_residues MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLFLAEGKIILSKEGAE QILNELQDYIETAK
Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA
COG id: COG2002
COG function: function code K; Regulators of stationary/sporulation gene expression
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis abh and spoVT [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006339 - InterPro: IPR007159 [H]
Pfam domain/function: PF04014 SpoVT_AbrB [H]
EC number: NA
Molecular weight: Translated: 10550; Mature: 10550
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEE SDGNLFLAEGKIILSKEGAEQILNELQDYIETAK CCCCEEEECCEEEEECCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEE SDGNLFLAEGKIILSKEGAEQILNELQDYIETAK CCCCEEEECCEEEEECCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]