Click here to switch to the map view.

The map label for this gene is 46447524

Identifier: 46447524

GI number: 46447524

Start: 2252757

End: 2253728

Strand: Reverse

Name: 46447524

Synonym: pc1890

Alternate gene names: NA

Gene position: 2253728-2252757 (Counterclockwise)

Preceding gene: 46447525

Following gene: 46447523

Centisome position: 93.34

GC content: 40.95

Gene sequence:

>972_bases
ATGCAACTTCCCGAAGATCTACAAAATGGTGTGATTGAAGCGTTAGAACAGGCAGGTTGGAATGAACTGCTAAATGCAAG
AGAAGTATTAACAGATCGTTACCGCTCCCACCAAAAACAGCAGTTCATGACTAATGATCAGCAACGCCTTTCTTATTTAG
CTACACGTCTACCAGCCACTTATGCTGCCGTTTATCAAACGCTCAATCAAATTAAAAAAACAGTCAACGGCATATCTATC
CATTCTTTATTAGATCTAGGAGCAGGTCCTGGAACAACTCTGTGGGCTGCTGCGCAAATTTTTCCTTTGCAAACGGCAAC
TTTATTTGAAAAAGACCAGTCTTTAGCTCTACTGGGTCAAAAATTAGCTCAGAGGAAAGAATTAGCTGTTTTTCAAAATT
GCCAATGGAAAATAGGGGACCTAGAGCTATTAGAGGAGCTTCCGGTGCATGATATGGTTACTCTTTCCTATTCAATAGGC
GAATTATCTTCTGCCTCTATTTTTCCGGTGTTACAGAAGTGTTGGCAAGCCACAAAAGAAATTTTGGTGATCATCGAACC
TGGGACTCCGACTGGTTTTGAAAGGATTCGACTTATTCGCCAAACATTAATCGATATGGGAGGACACATCGTAGCTCCTT
GCTCTCATGCCTTAAAGTGTCCGATTCTGAGAGGAGATTGGTGCCATTTTACAGCTCGTATCGAAAGAAGTTCTTTCCAC
AGGCGTTTGAAGGGAGGAACTTTAAATTATGAAGACGAAAAGTTTTCCTATATTGTTGTTTCTAAGTCCTCTCTTTTATT
ACCACCTGCTCGCATTTTACGCCATCCTCAACATCGATCCGGTCATAGTCTGTTTACGTTGTGCACTCCAAACGGAATTC
AACAAGAAACGATTTCCAAGCGAACTCCTCTTGAATACAAGATAGCTAAAAAACTCGAATGGGGGGAAGTCTTTTCTTTA
TCAGCAAAATAA

Upstream 100 bases:

>100_bases
CTTAACTTTAAACTGACTAAAACGGATAAAAAGCCTTATGATTAATCCTTTTTCCTTATTGAATAAAAAAAACGAAAGAA
ACATGCTTAGGTAATAAAAC

Downstream 100 bases:

>100_bases
ATAAATTTTCGTGAACAACAAAATGGGTTTTATTTTTAATCTTTGACTTTTGTTGCATAAAAGATTATGTCAATTGAGAA
CAAATTTAATGAAAAAAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Methyltransferase Type; SAM Methyltransferase; Methyltransferase; rRNA Methylase; Rsm22 Family Methyltransferase; rRNA Methylase-Like Protein

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MQLPEDLQNGVIEALEQAGWNELLNAREVLTDRYRSHQKQQFMTNDQQRLSYLATRLPATYAAVYQTLNQIKKTVNGISI
HSLLDLGAGPGTTLWAAAQIFPLQTATLFEKDQSLALLGQKLAQRKELAVFQNCQWKIGDLELLEELPVHDMVTLSYSIG
ELSSASIFPVLQKCWQATKEILVIIEPGTPTGFERIRLIRQTLIDMGGHIVAPCSHALKCPILRGDWCHFTARIERSSFH
RRLKGGTLNYEDEKFSYIVVSKSSLLLPPARILRHPQHRSGHSLFTLCTPNGIQQETISKRTPLEYKIAKKLEWGEVFSL
SAK

Sequences:

>Translated_323_residues
MQLPEDLQNGVIEALEQAGWNELLNAREVLTDRYRSHQKQQFMTNDQQRLSYLATRLPATYAAVYQTLNQIKKTVNGISI
HSLLDLGAGPGTTLWAAAQIFPLQTATLFEKDQSLALLGQKLAQRKELAVFQNCQWKIGDLELLEELPVHDMVTLSYSIG
ELSSASIFPVLQKCWQATKEILVIIEPGTPTGFERIRLIRQTLIDMGGHIVAPCSHALKCPILRGDWCHFTARIERSSFH
RRLKGGTLNYEDEKFSYIVVSKSSLLLPPARILRHPQHRSGHSLFTLCTPNGIQQETISKRTPLEYKIAKKLEWGEVFSL
SAK
>Mature_323_residues
MQLPEDLQNGVIEALEQAGWNELLNAREVLTDRYRSHQKQQFMTNDQQRLSYLATRLPATYAAVYQTLNQIKKTVNGISI
HSLLDLGAGPGTTLWAAAQIFPLQTATLFEKDQSLALLGQKLAQRKELAVFQNCQWKIGDLELLEELPVHDMVTLSYSIG
ELSSASIFPVLQKCWQATKEILVIIEPGTPTGFERIRLIRQTLIDMGGHIVAPCSHALKCPILRGDWCHFTARIERSSFH
RRLKGGTLNYEDEKFSYIVVSKSSLLLPPARILRHPQHRSGHSLFTLCTPNGIQQETISKRTPLEYKIAKKLEWGEVFSL
SAK

Specific function: Unknown

COG id: COG5459

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI12232389, Length=315, Percent_Identity=25.3968253968254, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI71999135, Length=316, Percent_Identity=25.6329113924051, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19921026, Length=291, Percent_Identity=28.1786941580756, Blast_Score=89, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36502; Mature: 36502

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLPEDLQNGVIEALEQAGWNELLNAREVLTDRYRSHQKQQFMTNDQQRLSYLATRLPAT
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHH
YAAVYQTLNQIKKTVNGISIHSLLDLGAGPGTTLWAAAQIFPLQTATLFEKDQSLALLGQ
HHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHH
KLAQRKELAVFQNCQWKIGDLELLEELPVHDMVTLSYSIGELSSASIFPVLQKCWQATKE
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC
ILVIIEPGTPTGFERIRLIRQTLIDMGGHIVAPCSHALKCPILRGDWCHFTARIERSSFH
EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCCCCCCEEHEEHHHHHHHH
RRLKGGTLNYEDEKFSYIVVSKSSLLLPPARILRHPQHRSGHSLFTLCTPNGIQQETISK
HHHCCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCHHHHHC
RTPLEYKIAKKLEWGEVFSLSAK
CCCCHHHHHHHCCCCCEEEECCC
>Mature Secondary Structure
MQLPEDLQNGVIEALEQAGWNELLNAREVLTDRYRSHQKQQFMTNDQQRLSYLATRLPAT
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHH
YAAVYQTLNQIKKTVNGISIHSLLDLGAGPGTTLWAAAQIFPLQTATLFEKDQSLALLGQ
HHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHH
KLAQRKELAVFQNCQWKIGDLELLEELPVHDMVTLSYSIGELSSASIFPVLQKCWQATKE
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC
ILVIIEPGTPTGFERIRLIRQTLIDMGGHIVAPCSHALKCPILRGDWCHFTARIERSSFH
EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCCCCCCEEHEEHHHHHHHH
RRLKGGTLNYEDEKFSYIVVSKSSLLLPPARILRHPQHRSGHSLFTLCTPNGIQQETISK
HHHCCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCHHHHHC
RTPLEYKIAKKLEWGEVFSLSAK
CCCCHHHHHHHCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA