Click here to switch to the map view.

The map label for this gene is ybhS [H]

Identifier: 46447521

GI number: 46447521

Start: 2248936

End: 2250063

Strand: Reverse

Name: ybhS [H]

Synonym: pc1887

Alternate gene names: 46447521

Gene position: 2250063-2248936 (Counterclockwise)

Preceding gene: 46447522

Following gene: 46447520

Centisome position: 93.19

GC content: 36.26

Gene sequence:

>1128_bases
ATGAATATAAATTCTTTTATTCGTTTAAAAGCATTGATAATCAAAGAATTTTTTCAAATTGTGAGAGATCCAAGCAGTCT
TTCTATCAGCTTGATCCTGCCTCTGATACTTTTATTTCTTTACGGGTATGGAGTCTCACTTGATGCCAATCATATTAAAA
TAGGATTGATTCTTGAAGATACTTCCCCAGATGCACAAAGTTTTGCTCAAACTTTAAAAGATTCTCGTTTTTTTGAAGTC
ACTGTGGCTCATGATAGGCATATTTTAAATACGCTTATGGTTGCTGGTTCCATTAAAGGAATTGTCATTGTTCCTTCGTA
CTTTACTTCCTTTAAAATGCGTTCTTACCATAAGGCTCCTATTCAAGTCTTAACGGATGGGAGTGAACCAAATACAGCTA
GCTTCGTTCAAAACTATATTCAAGGAGCATGGCAAAACTGGCTTATTCAAGAATCAACAATTCAGTCTAACCAAAAGATC
CCGTTTGTTCGCCCTTTGCCAAGATTTTGGTTTAATGAAGAATTAGAAAGTCGAAATTTTTTAATTCCAGGATCCTTAGC
GATTATTATGACCTTAATTGGAACACTTTTGACCGCTTTGGTTGTGGCAAGGGAATGGGAAAGAGGGACAATGGAAGCTT
TGATGTCCACTTCTGTAACAATTACAGAATTATTAATTGGTAAACTCGTGCCCTATTTCATTCTAGGAATGTTTGCTATG
ACTGTCTGTGTGTGTATCGCAGTCTTTTTTTATCACATTCCTTTAAGAGGCTCTTGGCTACTACTCGGATTTGTCACAGC
CATCTTTCTTTGGACAGCTTTGGGATTGGGACTGCTAATTTCCACGCTAACAAAAAATCAATTTACTGCAGCACAAGCGG
CCATTGTTGCCTCATATTTACCGGCTTTTATTTTGTCAGGATTTATTTTTGAAATTTCTAGTATGCCAACACCTATTCGT
TGGATTACCTATTTGATTCCGGCTCGGTATTTTGTTTCTAGTTTACAAACGATTTTCTTAGTTGGCAACATTTGGAAACT
TATCATTCCCAATACAGGAGTGATGTTACTGATTGGCTGTGTGATTTATTTGTTAACTGCTAAAAAAACAGTGAAAAGAC
TCGATTAG

Upstream 100 bases:

>100_bases
AGAATTTAAAAAGCATTGCAAAAACAGTTCAAAATCCCTACCCAACACTTGAAGATGCTTTTATTCACCTTATTGAAGAA
TACGAAAAAGAGAATCCAAC

Downstream 100 bases:

>100_bases
GAAAAACGAATGATTGATCGTATTATAGCTTTAATTATTAAAGAACTTTTAGCTGTTTGGCGAGATAAAAAGAGTCGATT
CATTTTAATTGTTCCTCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MNINSFIRLKALIIKEFFQIVRDPSSLSISLILPLILLFLYGYGVSLDANHIKIGLILEDTSPDAQSFAQTLKDSRFFEV
TVAHDRHILNTLMVAGSIKGIVIVPSYFTSFKMRSYHKAPIQVLTDGSEPNTASFVQNYIQGAWQNWLIQESTIQSNQKI
PFVRPLPRFWFNEELESRNFLIPGSLAIIMTLIGTLLTALVVAREWERGTMEALMSTSVTITELLIGKLVPYFILGMFAM
TVCVCIAVFFYHIPLRGSWLLLGFVTAIFLWTALGLGLLISTLTKNQFTAAQAAIVASYLPAFILSGFIFEISSMPTPIR
WITYLIPARYFVSSLQTIFLVGNIWKLIIPNTGVMLLIGCVIYLLTAKKTVKRLD

Sequences:

>Translated_375_residues
MNINSFIRLKALIIKEFFQIVRDPSSLSISLILPLILLFLYGYGVSLDANHIKIGLILEDTSPDAQSFAQTLKDSRFFEV
TVAHDRHILNTLMVAGSIKGIVIVPSYFTSFKMRSYHKAPIQVLTDGSEPNTASFVQNYIQGAWQNWLIQESTIQSNQKI
PFVRPLPRFWFNEELESRNFLIPGSLAIIMTLIGTLLTALVVAREWERGTMEALMSTSVTITELLIGKLVPYFILGMFAM
TVCVCIAVFFYHIPLRGSWLLLGFVTAIFLWTALGLGLLISTLTKNQFTAAQAAIVASYLPAFILSGFIFEISSMPTPIR
WITYLIPARYFVSSLQTIFLVGNIWKLIIPNTGVMLLIGCVIYLLTAKKTVKRLD
>Mature_375_residues
MNINSFIRLKALIIKEFFQIVRDPSSLSISLILPLILLFLYGYGVSLDANHIKIGLILEDTSPDAQSFAQTLKDSRFFEV
TVAHDRHILNTLMVAGSIKGIVIVPSYFTSFKMRSYHKAPIQVLTDGSEPNTASFVQNYIQGAWQNWLIQESTIQSNQKI
PFVRPLPRFWFNEELESRNFLIPGSLAIIMTLIGTLLTALVVAREWERGTMEALMSTSVTITELLIGKLVPYFILGMFAM
TVCVCIAVFFYHIPLRGSWLLLGFVTAIFLWTALGLGLLISTLTKNQFTAAQAAIVASYLPAFILSGFIFEISSMPTPIR
WITYLIPARYFVSSLQTIFLVGNIWKLIIPNTGVMLLIGCVIYLLTAKKTVKRLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=371, Percent_Identity=49.8652291105121, Blast_Score=377, Evalue=1e-106,
Organism=Escherichia coli, GI48994943, Length=378, Percent_Identity=29.1005291005291, Blast_Score=158, Evalue=7e-40,
Organism=Escherichia coli, GI1787010, Length=373, Percent_Identity=28.9544235924933, Blast_Score=151, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 42120; Mature: 42120

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINSFIRLKALIIKEFFQIVRDPSSLSISLILPLILLFLYGYGVSLDANHIKIGLILED
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC
TSPDAQSFAQTLKDSRFFEVTVAHDRHILNTLMVAGSIKGIVIVPSYFTSFKMRSYHKAP
CCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCC
IQVLTDGSEPNTASFVQNYIQGAWQNWLIQESTIQSNQKIPFVRPLPRFWFNEELESRNF
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHCCHHHCCCCE
LIPGSLAIIMTLIGTLLTALVVAREWERGTMEALMSTSVTITELLIGKLVPYFILGMFAM
ECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TVCVCIAVFFYHIPLRGSWLLLGFVTAIFLWTALGLGLLISTLTKNQFTAAQAAIVASYL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
PAFILSGFIFEISSMPTPIRWITYLIPARYFVSSLQTIFLVGNIWKLIIPNTGVMLLIGC
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VIYLLTAKKTVKRLD
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MNINSFIRLKALIIKEFFQIVRDPSSLSISLILPLILLFLYGYGVSLDANHIKIGLILED
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC
TSPDAQSFAQTLKDSRFFEVTVAHDRHILNTLMVAGSIKGIVIVPSYFTSFKMRSYHKAP
CCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCC
IQVLTDGSEPNTASFVQNYIQGAWQNWLIQESTIQSNQKIPFVRPLPRFWFNEELESRNF
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHCCHHHCCCCE
LIPGSLAIIMTLIGTLLTALVVAREWERGTMEALMSTSVTITELLIGKLVPYFILGMFAM
ECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TVCVCIAVFFYHIPLRGSWLLLGFVTAIFLWTALGLGLLISTLTKNQFTAAQAAIVASYL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
PAFILSGFIFEISSMPTPIRWITYLIPARYFVSSLQTIFLVGNIWKLIIPNTGVMLLIGC
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VIYLLTAKKTVKRLD
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]