Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46447437
Identifier: 46447437
GI number: 46447437
Start: 2155562
End: 2156632
Strand: Reverse
Name: 46447437
Synonym: pc1803
Alternate gene names: NA
Gene position: 2156632-2155562 (Counterclockwise)
Preceding gene: 46447442
Following gene: 46447435
Centisome position: 89.32
GC content: 36.6
Gene sequence:
>1071_bases ATGGAAAATGTAGACAAAGAGTTGCTTAAAGGCGATTTATTAATTAATAGTGAAGAAAATTTGCTTCAAGAAAAGCTACA ACAAAAAATTCATGAGTTAATAGAATTTATTGGAGCAGACCCTGAATCATTTCAATCAGTATTAATAGCACAAATTATTG CAACAAGTTTAAGGATGGGTCAAGAAGGGTTTGCACTGGGCCAACTTAAATTAATGACGCGTGCTTTTAAAGAGATGCGG TATGCTTATCGTGTATTTAATAAATATCCGGTAAATAAACGAATTAGTATTTTTGGTTCGTCTAGAACACCTGAATCCCA TCCCGATTATCAAGCTGCTAAATTTTTTGGAGCAGCTATGGCTGACCTTAACTGGGTTTGTATTACTGGAGCTGCTGATG GAATCATGAGAGCTGGACTGGAAGGAGCAGAAAAAGAATCCCGCTTTGGTTTATCTATTCGTCTACCTTTTGAGTCTCCT TCCAATTCACTTCTAGCCGGAGATCCAAAATTAATTAACTTCCGTTATTTCTTTACACGGAAATTAATGTTTTTGAGTCA TTCGGACGCTATAGCCGCTTTTCCAGGGGGAGTTGGTACCCAGGATGAATTATTTGAAGTGTTGACTTTAATGCAAACTG GAAAAGCTAATATTCTACCCGTTGTTCTTATAGAAGGAGAAAATGGATCCTACTGGCGAGCCTGGCAAGATTACCTATGT CAAAATTTATTAGCTAATGGATGGATCAGTCCGGAGGATTTAAATTTATTTTACCTTTCTTCATCGGTGAATGATGCTGT TGCCCATATTCAGCAATTTTATCGTCGCTATCACTCAAGTCGTTATGTCAAAGATGTTTTAGTCATTCGTTTATTGAGTA CACTCACAGATCAGCAGGTAGAGCAATTAAATCAAGAATTTTCCTCACTTTTAAAAGAGGGGAAAATGTATCTTACCAAA CCTCTCCAAGAAGAAACAGATCATTTGGAGCTACCCAGGCTCGCTTTTGAGCATAATAGAAGATATTTTGGTCTCCTTCG TTTACTTATTGATAAAATTAATAGCTTTTAA
Upstream 100 bases:
>100_bases ACCTCTAAAAAAATTCATGAATGAGCATATAAGTAAATTTCATTAAGTATTTATTGTTGATGCTCTCGAAGATTGTTGAT TATAATTAAAGGGTTCTCTA
Downstream 100 bases:
>100_bases GGTTGCCTTGGAAAAATTTTGCAAAATAACTTTAAAAACTATTTTTTAATCGTTGTACTTCAATTCTCATTAAGTAGTAG GGGGATTGAGAGGGGGAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MENVDKELLKGDLLINSEENLLQEKLQQKIHELIEFIGADPESFQSVLIAQIIATSLRMGQEGFALGQLKLMTRAFKEMR YAYRVFNKYPVNKRISIFGSSRTPESHPDYQAAKFFGAAMADLNWVCITGAADGIMRAGLEGAEKESRFGLSIRLPFESP SNSLLAGDPKLINFRYFFTRKLMFLSHSDAIAAFPGGVGTQDELFEVLTLMQTGKANILPVVLIEGENGSYWRAWQDYLC QNLLANGWISPEDLNLFYLSSSVNDAVAHIQQFYRRYHSSRYVKDVLVIRLLSTLTDQQVEQLNQEFSSLLKEGKMYLTK PLQEETDHLELPRLAFEHNRRYFGLLRLLIDKINSF
Sequences:
>Translated_356_residues MENVDKELLKGDLLINSEENLLQEKLQQKIHELIEFIGADPESFQSVLIAQIIATSLRMGQEGFALGQLKLMTRAFKEMR YAYRVFNKYPVNKRISIFGSSRTPESHPDYQAAKFFGAAMADLNWVCITGAADGIMRAGLEGAEKESRFGLSIRLPFESP SNSLLAGDPKLINFRYFFTRKLMFLSHSDAIAAFPGGVGTQDELFEVLTLMQTGKANILPVVLIEGENGSYWRAWQDYLC QNLLANGWISPEDLNLFYLSSSVNDAVAHIQQFYRRYHSSRYVKDVLVIRLLSTLTDQQVEQLNQEFSSLLKEGKMYLTK PLQEETDHLELPRLAFEHNRRYFGLLRLLIDKINSF >Mature_356_residues MENVDKELLKGDLLINSEENLLQEKLQQKIHELIEFIGADPESFQSVLIAQIIATSLRMGQEGFALGQLKLMTRAFKEMR YAYRVFNKYPVNKRISIFGSSRTPESHPDYQAAKFFGAAMADLNWVCITGAADGIMRAGLEGAEKESRFGLSIRLPFESP SNSLLAGDPKLINFRYFFTRKLMFLSHSDAIAAFPGGVGTQDELFEVLTLMQTGKANILPVVLIEGENGSYWRAWQDYLC QNLLANGWISPEDLNLFYLSSSVNDAVAHIQQFYRRYHSSRYVKDVLVIRLLSTLTDQQVEQLNQEFSSLLKEGKMYLTK PLQEETDHLELPRLAFEHNRRYFGLLRLLIDKINSF
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40685; Mature: 40685
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENVDKELLKGDLLINSEENLLQEKLQQKIHELIEFIGADPESFQSVLIAQIIATSLRMG CCCHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC QEGFALGQLKLMTRAFKEMRYAYRVFNKYPVNKRISIFGSSRTPESHPDYQAAKFFGAAM CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH ADLNWVCITGAADGIMRAGLEGAEKESRFGLSIRLPFESPSNSLLAGDPKLINFRYFFTR HCCCEEEEECCHHHHHHHCCCCCCCHHHCCEEEEECCCCCCCCEEECCCCEEEEHHHHHH KLMFLSHSDAIAAFPGGVGTQDELFEVLTLMQTGKANILPVVLIEGENGSYWRAWQDYLC HHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHH QNLLANGWISPEDLNLFYLSSSVNDAVAHIQQFYRRYHSSRYVKDVLVIRLLSTLTDQQV HHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQLNQEFSSLLKEGKMYLTKPLQEETDHLELPRLAFEHNRRYFGLLRLLIDKINSF HHHHHHHHHHHHHCCHHCCCCHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MENVDKELLKGDLLINSEENLLQEKLQQKIHELIEFIGADPESFQSVLIAQIIATSLRMG CCCHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC QEGFALGQLKLMTRAFKEMRYAYRVFNKYPVNKRISIFGSSRTPESHPDYQAAKFFGAAM CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH ADLNWVCITGAADGIMRAGLEGAEKESRFGLSIRLPFESPSNSLLAGDPKLINFRYFFTR HCCCEEEEECCHHHHHHHCCCCCCCHHHCCEEEEECCCCCCCCEEECCCCEEEEHHHHHH KLMFLSHSDAIAAFPGGVGTQDELFEVLTLMQTGKANILPVVLIEGENGSYWRAWQDYLC HHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHH QNLLANGWISPEDLNLFYLSSSVNDAVAHIQQFYRRYHSSRYVKDVLVIRLLSTLTDQQV HHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQLNQEFSSLLKEGKMYLTKPLQEETDHLELPRLAFEHNRRYFGLLRLLIDKINSF HHHHHHHHHHHHHCCHHCCCCHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA