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The map label for this gene is glgB

Identifier: 46447395

GI number: 46447395

Start: 2105546

End: 2107729

Strand: Reverse

Name: glgB

Synonym: pc1761

Alternate gene names: 46447395

Gene position: 2107729-2105546 (Counterclockwise)

Preceding gene: 46447396

Following gene: 46447394

Centisome position: 87.3

GC content: 36.49

Gene sequence:

>2184_bases
ATGATGACTATGCAACAGACTGAATTTGACTCTCAATTTAATGAACACATTTATCGTATCGTTCATGTTGTTCATCACCA
ACCTCATGCTTTTTTGGGTCTTCATTCTTTTTTCGAAGGATCTAAAGTTATTCGACTTTGGAGACCCAATGCGCAACAAA
TCTTTCTAGAATTATTCGGAAATATTGTTGAAGCTAGGCGTATTCATGAAATGGGGATTTTTGAATGTATTGTTCCTAGT
CATACAACAGCTATAGATTATAAAATATTTCATCAAAATGGAAAGCTTCATTTTGATCCTTATGCATTTCTACCCACATT
TGGAGAAGTCGATCAATATCTGTTTGGAAAGGGTGTTCATTATGAACTTTATCACCAAATGGGCGGAAGGTTAGCAACGC
ATCAGGGTATTCAAGGAGTAAAATTTGCTGTTTGGGCTCCTAATGCGAAAAGTGTTTCCTTAATAGCTGATTTTAATCAT
TGGGATGGAAAGGTCAATCCTATGCGTATCATGGGATACTCGGGTGTTTGGGAATTATTTGTACCTGGTTTGCAAGAGGG
AGAAAAATATAAGTTCGAAATTCATACTCAACAAGGGGAAAGAATTCTTAAATCCGATCCTTATGCGTTGTCAAGTGAAC
TGCGTCCAGCAACGGCCTCTAAAATTGCTAATATTGAGCGTTTTCAATGGCAAGACCAAGCGTGGATGGAACAAAGAAAG
GCGAAAAATTGGACTTCTTTACCTATGAATATCTATGAAGTTCATTTGGGGTCATGGAAAAAAAAGGATTCGAATTCAGA
ATTTTTAAATTATCGAGAACTTGCCCATGAATTGACTGCCTATTGTTTAGATATGGGATTTACTCATATAGAACTTCTTC
CTATTCAAGAACATCCTTTAGATGAGTCTTGGGGATATCAAGTTTCTGGTTTTTATGCCCCAACTAGTCGCTTTGGGCAC
CCTGAAGATTTTCAATATTTTGTGAATTATCTTCATCAACACCAGATAAGTCTTATTTTAGATTGGGTTCCCGGACATTT
TCCAACAGATGCATTTTCATTAGCACGTTTTGACGGCTCAGCTCTTTATGAACATGCAGATCCTCGTCAAGGCTATCATC
CTCATTGGCATACAAATATATTCAATTTTGGTCGACATGAAGTCTCCAATTTTTTAATTGCTAATGCCTTGTATTGGTTA
GAAATCATGCATGTCGATGGCCTTCGAGTCGATGCTGTTGCTTCCATGCTATATTTAGATTATGGCAGAGAGGAAAATGA
GTGGATTCCCAACGATGTTGGAGGGAAAGAAAATTTACAAGCGATCGAATTTTTAAAACATTTGAATTCTATTGTGCATT
CTAAATGTCCAGGTTCATTGATGATTGCGGAAGAATCTACATCATTTACAGGGGTTACGCATTCCGTAGAAAAAGGGGGA
TTGGGGTTTGACTTGAAATGGAATATGGGATGGATGAATGATACACTGCGTTATTTTTCCAAAGATATGTTATTTAGAAA
CTACCATCATCACGATCTAACTTTTGGATTAGTTTATGCATTCTCTGAAAAATTTATTTCTGTTTTTTCACACGATGAAG
TCGTTCATGGTAAAAAAAGCTTATTGAGCAAAATGCCTGGGGATATGTGGCAACAATTTGCTAACTTACGTTTATTGATT
AGCTATATGATTTGTCAACCGGGTAAAAAACTGCTGTTCATGGGTGCAGAAATTGGACAATGGAATGAATGGAATTGTAA
ATCGGGACTGGAATGGTTTTTATTGCAATTTCCTACCCATGCTGGAATTCACAAATTTGTTCAGGAAATTAATCATTTTT
ATTTAAAACAGCCAGCTCTATGGCAAAAAGACTTTAGTCATGAATCTTTTGAATGGGTAGATTTTGCAGATATGCACAAT
AGCGTGATTAGTTATGTCCGTAAAGGGGGTACAGAACGCCTTCTTTGTGTCCATAATTTTACGCCTCTTTATCACTCTGA
TTATATTTTACACTTAAGTCAGTTTGAGCACATCGAAGAAATTTTTAATTCAGATGCAGAGAAATTTGGAGGCTCTGGAA
AACATAATTTGAACCCAGAAATTATTCGAAATGAAGCTAGGTCTGTAATAGGGTTACGTCTCATCTTAGCCCCTCTTGCT
ACCCTAATTTTTAAACTCTCTTAG

Upstream 100 bases:

>100_bases
GTGAATGTTTTAATTTTGAAAAAAATTGTTATTACATCTTTGACAATTTTAAATAATTGACTATGATCCAGTCCAATTGC
TGATTCCAATAAGGTAGACT

Downstream 100 bases:

>100_bases
TTGCTTGGTAACCTAGACGTTTTAAATTTTTTTTGAAAACCTGCCCAGAGACTCAAAATTCATGTGTATGAACTTAGAAA
AACAAAATCATTTTACATTA

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE

Number of amino acids: Translated: 727; Mature: 727

Protein sequence:

>727_residues
MMTMQQTEFDSQFNEHIYRIVHVVHHQPHAFLGLHSFFEGSKVIRLWRPNAQQIFLELFGNIVEARRIHEMGIFECIVPS
HTTAIDYKIFHQNGKLHFDPYAFLPTFGEVDQYLFGKGVHYELYHQMGGRLATHQGIQGVKFAVWAPNAKSVSLIADFNH
WDGKVNPMRIMGYSGVWELFVPGLQEGEKYKFEIHTQQGERILKSDPYALSSELRPATASKIANIERFQWQDQAWMEQRK
AKNWTSLPMNIYEVHLGSWKKKDSNSEFLNYRELAHELTAYCLDMGFTHIELLPIQEHPLDESWGYQVSGFYAPTSRFGH
PEDFQYFVNYLHQHQISLILDWVPGHFPTDAFSLARFDGSALYEHADPRQGYHPHWHTNIFNFGRHEVSNFLIANALYWL
EIMHVDGLRVDAVASMLYLDYGREENEWIPNDVGGKENLQAIEFLKHLNSIVHSKCPGSLMIAEESTSFTGVTHSVEKGG
LGFDLKWNMGWMNDTLRYFSKDMLFRNYHHHDLTFGLVYAFSEKFISVFSHDEVVHGKKSLLSKMPGDMWQQFANLRLLI
SYMICQPGKKLLFMGAEIGQWNEWNCKSGLEWFLLQFPTHAGIHKFVQEINHFYLKQPALWQKDFSHESFEWVDFADMHN
SVISYVRKGGTERLLCVHNFTPLYHSDYILHLSQFEHIEEIFNSDAEKFGGSGKHNLNPEIIRNEARSVIGLRLILAPLA
TLIFKLS

Sequences:

>Translated_727_residues
MMTMQQTEFDSQFNEHIYRIVHVVHHQPHAFLGLHSFFEGSKVIRLWRPNAQQIFLELFGNIVEARRIHEMGIFECIVPS
HTTAIDYKIFHQNGKLHFDPYAFLPTFGEVDQYLFGKGVHYELYHQMGGRLATHQGIQGVKFAVWAPNAKSVSLIADFNH
WDGKVNPMRIMGYSGVWELFVPGLQEGEKYKFEIHTQQGERILKSDPYALSSELRPATASKIANIERFQWQDQAWMEQRK
AKNWTSLPMNIYEVHLGSWKKKDSNSEFLNYRELAHELTAYCLDMGFTHIELLPIQEHPLDESWGYQVSGFYAPTSRFGH
PEDFQYFVNYLHQHQISLILDWVPGHFPTDAFSLARFDGSALYEHADPRQGYHPHWHTNIFNFGRHEVSNFLIANALYWL
EIMHVDGLRVDAVASMLYLDYGREENEWIPNDVGGKENLQAIEFLKHLNSIVHSKCPGSLMIAEESTSFTGVTHSVEKGG
LGFDLKWNMGWMNDTLRYFSKDMLFRNYHHHDLTFGLVYAFSEKFISVFSHDEVVHGKKSLLSKMPGDMWQQFANLRLLI
SYMICQPGKKLLFMGAEIGQWNEWNCKSGLEWFLLQFPTHAGIHKFVQEINHFYLKQPALWQKDFSHESFEWVDFADMHN
SVISYVRKGGTERLLCVHNFTPLYHSDYILHLSQFEHIEEIFNSDAEKFGGSGKHNLNPEIIRNEARSVIGLRLILAPLA
TLIFKLS
>Mature_727_residues
MMTMQQTEFDSQFNEHIYRIVHVVHHQPHAFLGLHSFFEGSKVIRLWRPNAQQIFLELFGNIVEARRIHEMGIFECIVPS
HTTAIDYKIFHQNGKLHFDPYAFLPTFGEVDQYLFGKGVHYELYHQMGGRLATHQGIQGVKFAVWAPNAKSVSLIADFNH
WDGKVNPMRIMGYSGVWELFVPGLQEGEKYKFEIHTQQGERILKSDPYALSSELRPATASKIANIERFQWQDQAWMEQRK
AKNWTSLPMNIYEVHLGSWKKKDSNSEFLNYRELAHELTAYCLDMGFTHIELLPIQEHPLDESWGYQVSGFYAPTSRFGH
PEDFQYFVNYLHQHQISLILDWVPGHFPTDAFSLARFDGSALYEHADPRQGYHPHWHTNIFNFGRHEVSNFLIANALYWL
EIMHVDGLRVDAVASMLYLDYGREENEWIPNDVGGKENLQAIEFLKHLNSIVHSKCPGSLMIAEESTSFTGVTHSVEKGG
LGFDLKWNMGWMNDTLRYFSKDMLFRNYHHHDLTFGLVYAFSEKFISVFSHDEVVHGKKSLLSKMPGDMWQQFANLRLLI
SYMICQPGKKLLFMGAEIGQWNEWNCKSGLEWFLLQFPTHAGIHKFVQEINHFYLKQPALWQKDFSHESFEWVDFADMHN
SVISYVRKGGTERLLCVHNFTPLYHSDYILHLSQFEHIEEIFNSDAEKFGGSGKHNLNPEIIRNEARSVIGLRLILAPLA
TLIFKLS

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family

Homologues:

Organism=Homo sapiens, GI189458812, Length=603, Percent_Identity=27.363184079602, Blast_Score=174, Evalue=3e-43,
Organism=Escherichia coli, GI1789839, Length=709, Percent_Identity=46.1212976022567, Blast_Score=639, Evalue=0.0,
Organism=Escherichia coli, GI2367229, Length=344, Percent_Identity=26.7441860465116, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17554896, Length=617, Percent_Identity=26.904376012966, Blast_Score=167, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI32564391, Length=582, Percent_Identity=26.2886597938144, Blast_Score=143, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6320826, Length=620, Percent_Identity=24.0322580645161, Blast_Score=142, Evalue=1e-34,
Organism=Drosophila melanogaster, GI28573410, Length=620, Percent_Identity=25.1612903225806, Blast_Score=156, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLGB_PARUW (Q6MAB4)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_008760.1
- ProteinModelPortal:   Q6MAB4
- SMR:   Q6MAB4
- STRING:   Q6MAB4
- GeneID:   2780898
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc1761
- NMPDR:   fig|264201.1.peg.1761
- eggNOG:   COG0296
- HOGENOM:   HBG287139
- OMA:   DGTCLYE
- PhylomeDB:   Q6MAB4
- ProtClustDB:   PRK05402
- BioCyc:   CPRO264201:PC1761-MONOMER
- HAMAP:   MF_00685
- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756
- Gene3D:   G3DSA:2.60.40.1180
- Gene3D:   G3DSA:3.20.20.80
- Gene3D:   G3DSA:2.60.40.10
- TIGRFAMs:   TIGR01515

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48; SSF51445 Glyco_hydro_cat; SSF81296 Ig_E-set

EC number: =2.4.1.18

Molecular weight: Translated: 84633; Mature: 84633

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: ACT_SITE 306-306 ACT_SITE 341-341 ACT_SITE 346-346 ACT_SITE 409-409 ACT_SITE 411-411 ACT_SITE 464-464 ACT_SITE 531-531 ACT_SITE 532-532

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTMQQTEFDSQFNEHIYRIVHVVHHQPHAFLGLHSFFEGSKVIRLWRPNAQQIFLELFG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
NIVEARRIHEMGIFECIVPSHTTAIDYKIFHQNGKLHFDPYAFLPTFGEVDQYLFGKGVH
HHHHHHHHHHCCHHEEECCCCCCEEEEEEEECCCCEEECCCEECCCHHHHHHHHHCCCCH
YELYHQMGGRLATHQGIQGVKFAVWAPNAKSVSLIADFNHWDGKVNPMRIMGYSGVWELF
HHHHHHHCCEEECCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHH
VPGLQEGEKYKFEIHTQQGERILKSDPYALSSELRPATASKIANIERFQWQDQAWMEQRK
CCCCCCCCEEEEEEECCCCCHHHHCCCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
AKNWTSLPMNIYEVHLGSWKKKDSNSEFLNYRELAHELTAYCLDMGFTHIELLPIQEHPL
CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
DESWGYQVSGFYAPTSRFGHPEDFQYFVNYLHQHQISLILDWVPGHFPTDAFSLARFDGS
CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHCCCC
ALYEHADPRQGYHPHWHTNIFNFGRHEVSNFLIANALYWLEIMHVDGLRVDAVASMLYLD
HHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHH
YGREENEWIPNDVGGKENLQAIEFLKHLNSIVHSKCPGSLMIAEESTSFTGVTHSVEKGG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHCCC
LGFDLKWNMGWMNDTLRYFSKDMLFRNYHHHDLTFGLVYAFSEKFISVFSHDEVVHGKKS
CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCHHH
LLSKMPGDMWQQFANLRLLISYMICQPGKKLLFMGAEIGQWNEWNCKSGLEWFLLQFPTH
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCC
AGIHKFVQEINHFYLKQPALWQKDFSHESFEWVDFADMHNSVISYVRKGGTERLLCVHNF
HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEECC
TPLYHSDYILHLSQFEHIEEIFNSDAEKFGGSGKHNLNPEIIRNEARSVIGLRLILAPLA
CCCCCCCCEEEHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TLIFKLS
HHHHCCC
>Mature Secondary Structure
MMTMQQTEFDSQFNEHIYRIVHVVHHQPHAFLGLHSFFEGSKVIRLWRPNAQQIFLELFG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
NIVEARRIHEMGIFECIVPSHTTAIDYKIFHQNGKLHFDPYAFLPTFGEVDQYLFGKGVH
HHHHHHHHHHCCHHEEECCCCCCEEEEEEEECCCCEEECCCEECCCHHHHHHHHHCCCCH
YELYHQMGGRLATHQGIQGVKFAVWAPNAKSVSLIADFNHWDGKVNPMRIMGYSGVWELF
HHHHHHHCCEEECCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHH
VPGLQEGEKYKFEIHTQQGERILKSDPYALSSELRPATASKIANIERFQWQDQAWMEQRK
CCCCCCCCEEEEEEECCCCCHHHHCCCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
AKNWTSLPMNIYEVHLGSWKKKDSNSEFLNYRELAHELTAYCLDMGFTHIELLPIQEHPL
CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
DESWGYQVSGFYAPTSRFGHPEDFQYFVNYLHQHQISLILDWVPGHFPTDAFSLARFDGS
CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHCCCC
ALYEHADPRQGYHPHWHTNIFNFGRHEVSNFLIANALYWLEIMHVDGLRVDAVASMLYLD
HHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHH
YGREENEWIPNDVGGKENLQAIEFLKHLNSIVHSKCPGSLMIAEESTSFTGVTHSVEKGG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHCCC
LGFDLKWNMGWMNDTLRYFSKDMLFRNYHHHDLTFGLVYAFSEKFISVFSHDEVVHGKKS
CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCHHH
LLSKMPGDMWQQFANLRLLISYMICQPGKKLLFMGAEIGQWNEWNCKSGLEWFLLQFPTH
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCC
AGIHKFVQEINHFYLKQPALWQKDFSHESFEWVDFADMHNSVISYVRKGGTERLLCVHNF
HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEECC
TPLYHSDYILHLSQFEHIEEIFNSDAEKFGGSGKHNLNPEIIRNEARSVIGLRLILAPLA
CCCCCCCCEEEHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TLIFKLS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA