Click here to switch to the map view.

The map label for this gene is rpmH

Identifier: 46447238

GI number: 46447238

Start: 1920591

End: 1920728

Strand: Reverse

Name: rpmH

Synonym: pc1604

Alternate gene names: 46447238

Gene position: 1920728-1920591 (Counterclockwise)

Preceding gene: 46447241

Following gene: 46447237

Centisome position: 79.55

GC content: 43.48

Gene sequence:

>138_bases
GTGAAGCGTACTTATCAACCCAGCAAACGTCGCCGTTCTTCTGAGCATGGCTTTTTGAAAAGAATGGGCACAGCCAACGG
ACGTAAAATTATTAGTAGACGTCGTAGACATGGACGTAAACAATTAACACGCGTTTAA

Upstream 100 bases:

>100_bases
AATTATTCTTAAAAATCAATATTATTTTGTCCATGTTTAAACGTTTAAAAGCAAGCTAAGCTTTTATTAACATTGAATTT
AAATTTAAGGAAATTTAGCC

Downstream 100 bases:

>100_bases
CTTATCGTTTTCCTAAGTCAATGCGCTTGCGTACGCGTAAGCAGTACCAGCGCATGGCTAATGGATCTTCTCGGTACATT
GGACGATGGATTATTTTAGA

Product: 50S ribosomal protein L34

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 45; Mature: 45

Protein sequence:

>45_residues
MKRTYQPSKRRRSSEHGFLKRMGTANGRKIISRRRRHGRKQLTRV

Sequences:

>Translated_45_residues
MKRTYQPSKRRRSSEHGFLKRMGTANGRKIISRRRRHGRKQLTRV
>Mature_45_residues
MKRTYQPSKRRRSSEHGFLKRMGTANGRKIISRRRRHGRKQLTRV

Specific function: Unknown

COG id: COG0230

COG function: function code J; Ribosomal protein L34

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L34P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL34_PARUW (Q6MAS1)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_008603.1
- ProteinModelPortal:   Q6MAS1
- SMR:   Q6MAS1
- STRING:   Q6MAS1
- GeneID:   2781056
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc1604
- NMPDR:   fig|264201.1.peg.1604
- eggNOG:   NOG151003
- HOGENOM:   HBG729750
- ProtClustDB:   CLSK2762430
- BioCyc:   CPRO264201:PC1604-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00391
- InterPro:   IPR000271
- InterPro:   IPR020939
- ProDom:   PD003101
- TIGRFAMs:   TIGR01030

Pfam domain/function: PF00468 Ribosomal_L34

EC number: NA

Molecular weight: Translated: 5480; Mature: 5480

Theoretical pI: Translated: 12.98; Mature: 12.98

Prosite motif: PS00784 RIBOSOMAL_L34

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTYQPSKRRRSSEHGFLKRMGTANGRKIISRRRRHGRKQLTRV
CCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRTYQPSKRRRSSEHGFLKRMGTANGRKIISRRRRHGRKQLTRV
CCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA