Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is nuoI [H]
Identifier: 46446201
GI number: 46446201
Start: 701487
End: 701918
Strand: Direct
Name: nuoI [H]
Synonym: pc0567
Alternate gene names: 46446201
Gene position: 701487-701918 (Clockwise)
Preceding gene: 46446200
Following gene: 46446202
Centisome position: 29.05
GC content: 39.81
Gene sequence:
>432_bases TTGATTATCGTTTTAAAACACGCTTTTCAAACTCCGGTCACACTGCGTTATCCTGAAGAAAAACGAATTTTACCAGCCAG GTCTCGAGGTAGGCATTATTTAACAAAATGGAATGATGGTTTGGAAAGGTGTGTTGGTTGCGAACTTTGTGCTATCGTTT GCCCAGCCCAGGCTATTTATGTGAAACCAGCTGCTAATGAACCGGGTCATATCCATTCTCATGGGGAGCGATATGCTTCT GATTTTCAGATTAATATGTTGCGATGCATTTTTTGTGGTTATTGTGAAGAAGCTTGTCCAACTGGAGCAATTGTTTTAAG TAATCAATATGAACTTTCAGCCTACACTAGAGAAGATATGATTTATACTAAAGATCGATTAACAGAGAAAACACCCGGAG AATCCGGACGCGATCCTAGTAGGGAGATTTAA
Upstream 100 bases:
>100_bases TTGATTCCCATTGCCATCTTAAATCTAATTATAACAGCATACTTTACGTTGGTGTAGCATGAGAACAACTATACACAAAG TTATCACAATGATGAAAGGG
Downstream 100 bases:
>100_bases GTCATGATGACCTCTTTAGCTTCACCTGAACAATGGATTTTTGGAATTTTACTTTTAATCTCTTCTTTCGGAATTCTTCT CACATCAAAACCTATTCAAG
Product: NADH-ubiquinone oxidoreductase chain I
Products: NA
Alternate protein names: NADH dehydrogenase I subunit I; NDH-1 subunit I [H]
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MIIVLKHAFQTPVTLRYPEEKRILPARSRGRHYLTKWNDGLERCVGCELCAIVCPAQAIYVKPAANEPGHIHSHGERYAS DFQINMLRCIFCGYCEEACPTGAIVLSNQYELSAYTREDMIYTKDRLTEKTPGESGRDPSREI
Sequences:
>Translated_143_residues MIIVLKHAFQTPVTLRYPEEKRILPARSRGRHYLTKWNDGLERCVGCELCAIVCPAQAIYVKPAANEPGHIHSHGERYAS DFQINMLRCIFCGYCEEACPTGAIVLSNQYELSAYTREDMIYTKDRLTEKTPGESGRDPSREI >Mature_143_residues MIIVLKHAFQTPVTLRYPEEKRILPARSRGRHYLTKWNDGLERCVGCELCAIVCPAQAIYVKPAANEPGHIHSHGERYAS DFQINMLRCIFCGYCEEACPTGAIVLSNQYELSAYTREDMIYTKDRLTEKTPGESGRDPSREI
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG1143
COG function: function code C; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Homo sapiens, GI4505371, Length=125, Percent_Identity=41.6, Blast_Score=109, Evalue=9e-25, Organism=Escherichia coli, GI1788617, Length=128, Percent_Identity=46.875, Blast_Score=114, Evalue=2e-27, Organism=Escherichia coli, GI1789075, Length=122, Percent_Identity=33.6065573770492, Blast_Score=65, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17555194, Length=125, Percent_Identity=42.4, Blast_Score=110, Evalue=3e-25, Organism=Drosophila melanogaster, GI17864306, Length=125, Percent_Identity=40.8, Blast_Score=111, Evalue=2e-25,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001450 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR012285 - InterPro: IPR010226 [H]
Pfam domain/function: PF00037 Fer4 [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 16281; Mature: 16281
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 5.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 7.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIVLKHAFQTPVTLRYPEEKRILPARSRGRHYLTKWNDGLERCVGCELCAIVCPAQAIY CEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHCHHHHEEECCCEEEE VKPAANEPGHIHSHGERYASDFQINMLRCIFCGYCEEACPTGAIVLSNQYELSAYTREDM EECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCE IYTKDRLTEKTPGESGRDPSREI EEEHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIIVLKHAFQTPVTLRYPEEKRILPARSRGRHYLTKWNDGLERCVGCELCAIVCPAQAIY CEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHCHHHHEEECCCEEEE VKPAANEPGHIHSHGERYASDFQINMLRCIFCGYCEEACPTGAIVLSNQYELSAYTREDM EECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCE IYTKDRLTEKTPGESGRDPSREI EEEHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA